Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 2.6e-161 572.0 292 100.0
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.1e-103 380.6 311 69.1
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 4.0e-53 212.6 289 48.4
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.7e-49 199.9 291 47.1
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.7e-48 197.2 303 43.9
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 7.3e-47 191.8 288 45.1
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 2.9e-43 179.9 308 42.9
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 8.4e-43 178.3 288 42.4
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.4e-42 177.6 302 41.1
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 6.0e-41 172.2 296 40.2
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 7.8e-41 171.8 291 40.9
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 7.8e-41 171.8 276 43.5
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 1.0e-40 171.4 120 71.7
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 3.0e-40 169.9 281 42.3
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 3.0e-40 169.9 288 40.6
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.3e-39 166.4 278 42.1
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 3.3e-39 166.4 300 37.7
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 5.6e-39 165.6 288 41.3
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 4.8e-38 162.5 286 40.6
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 1.1e-37 161.4 299 42.1
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 1.8e-37 160.6 291 39.5
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.0e-36 157.1 300 40.3
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.0e-36 157.1 300 40.3
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 2.0e-36 157.1 294 39.1
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 2.6e-36 156.8 320 40.0
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 6.4e-35 152.1 290 40.0
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 6.4e-35 152.1 305 39.0
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 1.4e-34 151.0 276 37.7
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.4e-34 150.2 288 38.9
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 3.2e-34 149.8 307 37.8
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 5.4e-34 149.1 285 38.2
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 7.1e-34 148.7 325 36.0
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.6e-33 147.5 317 36.9
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 2.7e-33 146.7 284 39.8
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 2.7e-33 146.7 291 38.8
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.5e-33 146.4 278 40.3
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 3.5e-33 146.4 302 35.1
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 7.9e-33 145.2 292 37.0
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.8e-32 144.1 200 45.5
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 2.3e-32 143.7 305 36.4
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 2.3e-32 143.7 292 36.6
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 2.3e-32 143.7 304 34.9
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 3.9e-32 142.9 292 36.3
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.1e-32 142.5 295 36.9
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 8.7e-32 141.7 286 37.8
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 1.5e-31 141.0 293 36.5
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.5e-31 141.0 292 36.0
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 1.5e-31 141.0 306 36.3
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.9e-31 140.6 296 36.1
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 3.3e-31 139.8 288 38.9
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 4.3e-31 139.4 294 37.1
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 4.3e-31 139.4 197 46.2
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 4.3e-31 139.4 298 34.9
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 5.6e-31 139.0 298 35.9
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 7.4e-31 138.7 294 37.1
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 9.6e-31 138.3 291 38.5
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 9.6e-31 138.3 291 37.5
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 9.6e-31 138.3 296 38.2
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 1.6e-30 137.5 278 36.0
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.6e-30 137.5 294 36.7
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.1e-30 137.1 291 37.1
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 2.1e-30 137.1 329 34.0
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 2.8e-30 136.7 299 36.5
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 3.7e-30 136.3 286 36.7
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 4.8e-30 136.0 299 35.5
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 6.2e-30 135.6 288 35.4
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 6.2e-30 135.6 294 34.7
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.8e-29 134.0 293 35.5
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 2.4e-29 133.7 290 39.0
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 2.4e-29 133.7 276 39.5
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 2.4e-29 133.7 302 36.4
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 3.1e-29 133.3 293 33.8
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 3.1e-29 133.3 292 36.0
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 4.0e-29 132.9 293 34.8
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 4.0e-29 132.9 284 35.9
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 6.9e-29 132.1 295 35.3
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.6e-28 130.2 307 35.2
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 3.4e-28 129.8 272 37.9
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 3.4e-28 129.8 299 34.8
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 3.4e-28 129.8 151 51.7
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 9.9e-28 128.3 268 37.3
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 1.3e-27 127.9 270 38.5
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 1.7e-27 127.5 293 37.2
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.9e-27 126.7 300 36.0
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.9e-27 126.7 287 35.2
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.9e-27 126.7 116 56.9
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 2.9e-27 126.7 289 32.9
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 4.9e-27 125.9 297 35.0
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 6.4e-27 125.6 271 36.2
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 1.4e-26 124.4 296 38.5
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.9e-26 124.0 300 32.0
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.4e-26 123.6 162 45.7
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 4.2e-26 122.9 289 35.3
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.2e-26 122.9 297 35.0
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.2e-25 121.3 294 33.0
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 2.1e-25 120.6 197 38.1
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 2.7e-25 120.2 283 31.8
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 4.6e-25 119.4 204 41.7
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 6.0e-25 119.0 292 34.9
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 6.0e-25 119.0 266 38.3
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 6.0e-25 119.0 182 44.0
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 2.3e-24 117.1 285 35.4
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.3e-24 117.1 158 43.0
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 3.9e-24 116.3 141 46.8
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 5.1e-24 115.9 266 38.0
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 6.7e-24 115.5 295 33.2
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 1.9e-23 114.0 306 32.4
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 2.5e-23 113.6 292 33.6
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.6e-23 112.5 290 33.1
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 5.6e-23 112.5 272 34.2
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 7.4e-23 112.1 295 32.5
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 9.6e-23 111.7 280 34.6
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.3e-22 111.3 311 31.8
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.8e-22 110.2 124 47.6
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 6.2e-22 109.0 275 33.1
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 1.1e-21 108.2 174 42.5
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 5.3e-21 105.9 96 61.5
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 1.2e-20 104.8 291 31.6
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.5e-20 104.4 288 30.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 2.0e-20 104.0 285 30.2
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 4.5e-20 102.8 274 32.1
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 4.5e-20 102.8 283 31.1
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.5e-20 102.8 285 32.3
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 1.7e-19 100.9 294 31.3
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 4.9e-19 99.4 221 33.9
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 8.4e-19 98.6 281 31.0
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.4e-18 97.8 199 38.2
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 1.4e-18 97.8 295 28.5
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 5.5e-18 95.9 286 30.4
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 7.1e-18 95.5 182 38.5
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 2.7e-17 93.6 292 29.1
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 2.5e-15 87.0 278 29.5
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 9.7e-15 85.1 304 29.3
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 9.7e-15 85.1 99 41.4
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 4.8e-14 82.8 288 29.5
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 8.2e-14 82.0 304 28.9
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 1.4e-13 81.3 304 28.9
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 1.4e-13 81.3 119 37.0
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.8e-13 80.9 113 43.4
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 3.1e-13 80.1 280 27.1
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.1e-13 79.7 291 26.8
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 1.2e-12 78.2 213 34.3
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 1.2e-12 78.2 182 28.0
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 2.6e-12 77.0 184 32.1
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 4.5e-12 76.3 177 32.2
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 5.9e-12 75.9 217 29.0
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 6.5e-11 72.4 54 63.0
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 8.5e-11 72.0 100 39.0
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.1e-10 71.6 100 39.0
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 7.9e-09 65.5 64 50.0
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 1.3e-08 64.7 185 28.6
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 3.0e-08 63.5 105 35.2
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 3.3e-07 60.1 68 47.1
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.6e-06 57.8 245 28.6


User provided reference genes

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