Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 8.2e-116 420.6 246 100.0
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 6.1e-79 298.1 248 66.1
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 8.3e-76 287.7 269 63.9
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 2.7e-71 272.7 249 69.5
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 4.1e-67 258.8 248 65.3
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 2.7e-66 256.1 247 63.2
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 7.7e-66 254.6 248 54.4
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 1.0e-65 254.2 253 63.2
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.3e-65 253.1 241 58.9
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 2.3e-65 253.1 248 58.9
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 1.1e-64 250.8 249 60.6
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 3.3e-64 249.2 249 57.8
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 7.3e-64 248.1 248 57.3
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 7.3e-64 248.1 251 57.0
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 2.1e-63 246.5 249 57.0
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 2.8e-63 246.1 254 57.9
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 1.0e-62 244.2 250 57.6
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 1.8e-62 243.4 252 54.8
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 4.0e-62 242.3 248 57.3
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 8.9e-62 241.1 247 56.3
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 1.2e-61 240.7 247 56.7
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.5e-61 240.4 248 56.5
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 1.5e-61 240.4 250 58.4
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.0e-61 240.0 245 56.7
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 2.0e-61 240.0 252 53.6
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 2.0e-61 240.0 247 64.0
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 2.6e-61 239.6 252 51.6
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 3.4e-61 239.2 252 54.4
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 3.4e-61 239.2 250 51.6
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.4e-61 238.8 248 56.5
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 4.4e-61 238.8 251 55.0
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 9.8e-61 237.7 251 56.6
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.3e-60 237.3 247 55.5
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 1.7e-60 236.9 249 55.0
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 2.2e-60 236.5 251 55.4
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 2.9e-60 236.1 249 55.8
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 6.4e-60 235.0 246 56.9
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 8.3e-60 234.6 246 59.3
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.4e-59 233.8 248 56.5
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 1.4e-59 233.8 248 54.4
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 1.8e-59 233.4 254 57.5
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 2.4e-59 233.0 249 55.8
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 2.4e-59 233.0 252 57.1
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 3.2e-59 232.6 241 57.7
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 4.1e-59 232.3 249 55.8
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 5.4e-59 231.9 257 57.2
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 5.4e-59 231.9 243 56.4
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 7.0e-59 231.5 245 55.9
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 7.0e-59 231.5 253 56.1
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 7.0e-59 231.5 251 54.2
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 9.2e-59 231.1 250 55.2
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 3.5e-58 229.2 249 56.6
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 3.5e-58 229.2 253 55.7
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 4.6e-58 228.8 252 56.0
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 5.9e-58 228.4 246 56.1
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 5.9e-58 228.4 254 56.3
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 5.9e-58 228.4 252 59.1
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 7.8e-58 228.0 257 54.9
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 1.3e-57 227.3 252 55.2
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 1.3e-57 227.3 251 55.8
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 1.7e-57 226.9 251 54.2
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 6.6e-57 224.9 239 51.9
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 6.6e-57 224.9 250 54.4
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 8.6e-57 224.6 250 54.8
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 1.9e-56 223.4 254 59.4
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 5.6e-56 221.9 234 57.3
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 7.3e-56 221.5 281 49.8
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 9.5e-56 221.1 254 61.4
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.8e-55 219.5 248 54.4
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 3.6e-55 219.2 254 52.4
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 1.4e-54 217.2 251 55.0
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 1.8e-54 216.9 249 51.8
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 1.8e-54 216.9 252 48.8
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 1.8e-54 216.9 240 59.2
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 2.3e-54 216.5 248 53.6
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 2.3e-54 216.5 243 52.3
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 2.3e-54 216.5 248 53.6
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 3.1e-54 216.1 251 52.6
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 3.1e-54 216.1 251 52.6
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 3.1e-54 216.1 248 53.6
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 4.0e-54 215.7 251 52.6
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 2.9e-52 209.5 244 58.6
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 2.4e-51 206.5 253 50.2
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 6.0e-50 201.8 248 51.6
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 3.0e-49 199.5 218 58.3
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 5.0e-49 198.7 205 55.6
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 2.1e-47 193.4 204 53.9
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 2.1e-47 193.4 219 54.8
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 4.7e-47 192.2 248 50.0
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 1.4e-46 190.7 240 48.8
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 2.2e-44 183.3 227 47.6
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 2.4e-43 179.9 240 51.7
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 3.2e-43 179.5 256 44.5
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 4.1e-43 179.1 247 44.1
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 9.2e-43 177.9 187 54.5
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 3.5e-42 176.0 183 52.5
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 1.0e-41 174.5 182 51.6
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 2.3e-41 173.3 252 46.0
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 3.0e-41 172.9 188 50.5
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 1.5e-40 170.6 263 39.5
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 3.1e-38 162.9 275 42.2
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 6.8e-38 161.8 259 38.6
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 7.1e-35 151.8 154 54.5
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 9.6e-32 141.4 154 51.3
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 8.1e-31 138.3 150 46.7
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 5.2e-30 135.6 250 37.6
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 9.3e-27 124.8 160 50.0
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 1.0e-25 121.3 244 37.7
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 4.8e-23 112.5 113 58.4
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 3.4e-21 106.3 158 39.9
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.4e-19 100.9 118 55.1
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.4e-19 100.9 118 55.1
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.0e-17 94.7 218 35.3
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 3.9e-17 92.8 126 43.7
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 5.1e-17 92.4 330 25.2
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 1.9e-11 73.9 61 60.7
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 2.3e-09 67.0 57 56.1
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 5.1e-09 65.9 99 39.4
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 1.9e-08 63.9 45 57.8
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 1.9e-08 63.9 84 39.3
Gohir.A12G052500 Gossypium hirsutum HOM05D005384 ORTHO05D006477 2.4e-06 57.0 70 40.0
Gohir.D12G051100 Gossypium hirsutum HOM05D005384 ORTHO05D006477 2.4e-06 57.0 70 40.0
Gorai.008G054400 Gossypium raimondii HOM05D005384 ORTHO05D006477 2.4e-06 57.0 70 40.0
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 3.1e-06 56.6 52 48.1
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 3.1e-06 56.6 52 48.1
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 3.1e-06 56.6 52 48.1
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 4.0e-06 56.2 52 48.1
Migut.E00282 Erythranthe guttata HOM05D005384 ORTHO05D006477 4.0e-06 56.2 51 49.0
MSTRG.2272 Avicennia marina HOM05D005384 ORTHO05D006477 6.9e-06 55.5 51 51.0
Thecc.04G058100 Theobroma cacao HOM05D005384 ORTHO05D006477 9.0e-06 55.1 70 40.0
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 9.0e-06 55.1 52 48.1


User provided reference genes

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