Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 0.0e+00 1548.5 761 100.0
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 9.4e-288 993.4 783 65.9
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 1.8e-283 979.2 781 65.0
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 4.1e-275 951.4 779 63.2
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 5.4e-275 951.0 784 62.6
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 2.0e-274 949.1 778 62.5
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 2.0e-274 949.1 777 62.4
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 3.5e-274 948.3 778 62.6
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 1.0e-273 946.8 778 62.7
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 3.6e-271 938.3 778 61.8
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 4.7e-271 937.9 779 62.6
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 6.8e-270 934.1 780 62.4
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.7e-268 929.5 776 62.9
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 4.3e-264 914.8 783 61.7
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 5.6e-264 914.4 783 61.7
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 7.3e-264 914.1 775 61.5
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 3.6e-263 911.8 804 60.4
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.7e-260 902.9 775 59.7
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 1.9e-259 899.4 764 60.7
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 6.0e-258 894.4 792 59.7
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 5.1e-257 891.3 780 59.7
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 1.9e-256 889.4 774 60.7
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.5e-256 889.0 780 59.0
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 2.1e-255 885.9 772 60.0
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 4.7e-255 884.8 773 59.6
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 8.1e-255 884.0 771 60.1
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 3.1e-254 882.1 774 58.9
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 8.9e-254 880.6 768 59.6
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 1.2e-253 880.2 771 59.9
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 2.0e-253 879.4 768 59.6
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 5.8e-253 877.9 771 58.8
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 7.5e-253 877.5 771 59.8
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 1.3e-252 876.7 771 59.8
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 6.4e-252 874.4 780 59.0
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 8.3e-252 874.0 779 59.1
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 1.2e-250 870.2 780 59.1
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 2.1e-250 869.4 782 58.6
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 7.8e-250 867.5 772 58.7
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.3e-249 865.9 790 58.4
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 3.9e-249 865.1 779 58.0
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 5.1e-249 864.8 777 57.9
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.1e-248 863.6 784 57.7
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 4.3e-248 861.7 772 58.4
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 4.3e-248 861.7 772 58.2
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 5.6e-248 861.3 763 60.4
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 7.3e-248 860.9 782 58.8
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 1.6e-247 859.8 772 57.9
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 4.7e-247 858.2 776 58.1
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.2e-247 857.8 769 57.2
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 1.8e-246 856.3 770 57.9
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.8e-246 856.3 770 57.9
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 1.8e-246 856.3 771 58.0
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.4e-246 855.9 770 57.9
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 6.8e-246 854.4 779 56.4
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 8.9e-246 854.0 770 57.0
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 2.6e-245 852.4 779 56.0
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.6e-245 852.4 771 58.2
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 5.8e-245 851.3 784 57.8
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.7e-244 849.7 770 57.5
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 2.9e-244 849.0 778 58.1
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.9e-243 846.3 771 57.1
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.9e-243 846.3 779 56.2
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.6e-242 843.2 771 56.7
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.6e-242 843.2 774 57.8
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 6.0e-242 841.3 779 55.3
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 6.0e-242 841.3 779 57.5
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.3e-241 840.1 772 57.4
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 3.0e-241 839.0 782 57.3
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 6.6e-241 837.8 781 56.1
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 1.1e-240 837.0 781 54.8
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 1.5e-240 836.6 773 56.7
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 3.3e-240 835.5 773 58.2
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 5.6e-240 834.7 771 56.8
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 5.6e-240 834.7 776 55.8
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 5.3e-238 828.2 772 55.8
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.0e-237 826.2 770 56.5
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 3.4e-237 825.5 772 55.7
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 3.4e-237 825.5 771 56.4
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.4e-237 825.1 772 57.0
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 7.6e-237 824.3 776 54.8
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 1.3e-236 823.5 772 55.7
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.3e-236 823.5 773 56.1
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 2.2e-236 822.8 766 56.1
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 3.8e-236 822.0 777 54.4
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 3.8e-236 822.0 775 55.9
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 2.4e-235 819.3 773 55.1
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 9.3e-235 817.4 762 56.2
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.3e-235 817.4 773 56.0
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 2.7e-234 815.8 759 56.1
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.0e-233 813.9 778 55.7
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.3e-233 813.5 781 54.3
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 2.3e-233 812.8 773 54.5
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 3.0e-233 812.4 761 55.6
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 3.9e-233 812.0 810 53.8
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 1.5e-232 810.1 772 55.8
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 3.3e-232 808.9 809 54.1
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 5.6e-232 808.1 775 54.7
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.3e-231 807.0 778 55.9
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 1.3e-231 807.0 762 55.0
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 1.6e-231 806.6 773 55.6
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.6e-231 806.6 772 55.8
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 4.8e-231 805.1 772 54.5
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.4e-230 803.5 784 54.2
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 2.4e-230 802.7 771 56.4
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 3.1e-230 802.4 773 55.0
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 5.3e-230 801.6 780 54.1
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.5e-229 800.0 773 53.8
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 7.6e-229 797.7 775 54.2
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 2.9e-228 795.8 765 55.0
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.8e-228 795.4 781 54.4
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 3.8e-228 795.4 784 54.8
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 4.9e-228 795.0 807 53.3
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.0e-225 787.3 778 54.6
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.8e-222 776.5 770 53.5
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.5e-221 773.5 777 52.3
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.0e-221 773.1 768 53.3
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.8e-221 771.5 775 53.8
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 5.8e-221 771.5 718 57.9
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 7.6e-221 771.2 616 63.6
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 7.6e-221 771.2 779 52.8
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 2.9e-220 769.2 783 52.7
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.1e-219 767.3 764 54.3
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 3.2e-219 765.8 741 56.1
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 1.2e-218 763.8 778 54.0
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 4.6e-218 761.9 782 52.3
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 9.6e-216 754.2 781 52.9
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.2e-211 739.2 775 50.3
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 9.7e-208 727.6 756 51.5
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.2e-202 710.7 782 50.5
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.1e-200 704.1 773 50.3
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 3.3e-200 702.6 851 48.4
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.4e-198 696.4 765 51.2
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 4.1e-198 695.7 773 49.4
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 7.7e-197 691.4 728 52.5
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 3.8e-196 689.1 727 52.7
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.7e-194 682.9 411 82.0
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.1e-184 651.0 702 52.6
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.5e-179 634.0 731 49.0
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.3e-172 610.9 680 50.3
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 6.3e-167 592.0 777 43.4
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.8e-161 573.9 776 40.9
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.1e-158 564.7 733 43.4
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 5.4e-158 562.4 434 62.9
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.1e-155 554.7 791 41.8
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 1.1e-145 521.5 390 65.4
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.1e-145 521.5 390 65.4
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 6.4e-143 512.3 755 40.4
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 9.5e-139 498.4 789 37.3
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 7.6e-136 488.8 773 41.0
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 1.0e-132 478.4 557 46.3
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 5.3e-121 439.5 277 73.6
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 1.1e-110 405.2 421 53.0
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.5e-104 384.8 253 71.1
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 8.2e-98 362.5 449 47.0
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 5.9e-88 329.7 289 63.7
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 3.8e-87 327.0 746 33.5
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.8e-82 310.1 453 39.7
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 5.4e-57 226.9 776 27.4
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.3e-44 184.9 286 40.6
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.2e-35 156.0 83 78.3
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 2.1e-24 118.6 198 38.4
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 3.5e-24 117.9 113 53.1
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 7.8e-24 116.7 67 77.6
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.5e-14 85.9 111 45.9
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.1e-12 79.7 157 33.1
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 1.4e-12 79.3 101 42.6
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 2.4e-12 78.6 74 52.7
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.4e-12 78.6 125 37.6
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 1.3e-10 72.8 47 72.3
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.9e-09 68.9 64 57.8
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 3.2e-09 68.2 40 72.5


User provided reference genes

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