Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 0.0e+00 1221.1 620 100.0
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.2e-192 677.2 658 57.9
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 2.1e-192 676.4 636 58.8
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 1.1e-180 637.5 652 56.4
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 1.8e-180 636.7 640 55.3
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 1.3e-178 630.6 658 52.9
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 1.9e-177 626.7 656 53.4
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.2e-177 625.9 641 54.6
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 1.6e-176 623.6 644 55.4
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 1.4e-175 620.5 647 54.3
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.8e-175 620.2 641 54.3
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 8.8e-175 617.8 658 52.4
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 8.8e-175 617.8 644 54.3
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.6e-174 616.3 628 54.0
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.6e-174 616.3 628 53.8
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 3.3e-174 615.9 640 53.4
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 5.7e-174 615.1 656 52.0
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.3e-173 614.0 632 52.7
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.3e-173 614.0 646 53.9
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 2.2e-173 613.2 634 53.3
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 3.7e-173 612.5 636 53.8
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 1.4e-172 610.5 615 55.3
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 1.8e-172 610.1 635 52.0
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 4.1e-172 609.0 631 53.7
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 4.1e-172 609.0 635 52.6
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.2e-171 607.4 634 52.8
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.2e-171 607.4 634 52.8
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 7.7e-171 604.7 621 53.0
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 7.7e-171 604.7 635 52.4
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.0e-170 604.4 633 51.8
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.8e-170 602.4 634 52.8
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 1.1e-169 600.9 631 53.6
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 1.5e-169 600.5 656 51.5
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.9e-169 600.1 630 52.4
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.9e-169 600.1 632 52.5
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 3.2e-169 599.4 616 52.4
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 7.2e-169 598.2 652 53.1
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.2e-169 598.2 634 52.5
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.7e-168 596.3 634 52.2
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 8.0e-168 594.7 631 53.2
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.8e-167 593.6 630 52.4
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 2.0e-166 590.1 649 50.2
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 2.0e-166 590.1 613 53.0
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 5.7e-166 588.6 630 51.9
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 9.7e-166 587.8 630 52.4
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 1.3e-165 587.4 629 52.0
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 2.2e-165 586.6 635 51.7
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 6.3e-165 585.1 613 52.4
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.1e-164 584.3 670 49.4
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 1.4e-164 583.9 641 51.8
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 2.4e-164 583.2 625 51.7
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 3.1e-164 582.8 670 49.4
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.2e-163 580.9 632 52.8
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 4.5e-163 578.9 653 50.2
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 1.3e-162 577.4 610 53.1
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 1.7e-162 577.0 636 50.8
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 2.5e-161 573.2 648 49.5
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.2e-160 570.9 634 50.6
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 4.7e-160 568.9 634 49.7
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 4.7e-160 568.9 629 50.7
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 4.7e-160 568.9 573 58.1
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 6.1e-160 568.5 496 59.7
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.4e-159 567.4 613 52.5
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 2.3e-159 566.6 622 51.8
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 3.0e-159 566.2 628 49.2
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 5.2e-159 565.5 675 48.7
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 8.8e-159 564.7 605 51.7
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 1.7e-157 560.5 634 49.2
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.8e-157 559.7 603 52.1
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 3.7e-157 559.3 623 50.4
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 3.7e-157 559.3 648 49.1
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 9.1e-156 554.7 635 49.8
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 9.1e-156 554.7 636 50.6
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 3.5e-155 552.7 630 49.8
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.2e-154 550.1 648 48.5
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 6.5e-154 548.5 643 48.7
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 9.4e-153 544.7 625 50.9
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 8.0e-152 541.6 653 47.8
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 8.8e-151 538.1 644 48.1
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 8.8e-151 538.1 644 48.3
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.2e-150 537.7 627 49.6
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.5e-150 537.3 638 49.4
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 9.8e-150 534.6 648 48.6
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 2.2e-149 533.5 615 49.8
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 4.9e-149 532.3 639 48.8
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 6.3e-149 531.9 626 49.0
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 1.1e-148 531.2 605 49.1
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 3.5e-147 526.2 621 48.8
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 5.9e-147 525.4 620 48.9
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 6.6e-146 521.9 631 48.5
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 8.6e-146 521.5 612 48.5
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 1.5e-145 520.8 630 48.3
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 7.3e-145 518.5 611 48.6
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.2e-144 517.7 632 48.1
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 1.6e-144 517.3 613 49.8
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.0e-143 514.6 542 52.6
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.4e-143 514.2 616 48.5
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 6.8e-143 511.9 599 48.9
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 8.9e-143 511.5 611 49.3
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 8.9e-143 511.5 602 49.8
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 3.4e-142 509.6 616 48.5
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 3.4e-142 509.6 617 49.4
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 2.2e-141 506.9 641 47.0
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 4.9e-141 505.8 616 48.9
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.8e-140 503.8 489 56.4
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 7.8e-139 498.4 603 49.3
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 1.7e-138 497.3 616 48.5
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 1.5e-137 494.2 624 48.2
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 2.5e-137 493.4 614 48.4
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 4.3e-137 492.7 556 50.7
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 1.6e-136 490.7 625 46.4
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 3.6e-136 489.6 621 47.8
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 1.7e-133 480.7 615 46.2
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.1e-132 478.0 564 48.2
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.4e-132 477.6 659 43.2
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 3.9e-130 469.5 636 44.8
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 3.4e-126 456.4 650 42.0
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.5e-121 441.0 550 45.8
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 7.3e-121 438.7 624 45.0
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.1e-105 388.3 611 41.1
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.5e-105 387.9 693 38.4
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 2.9e-93 347.1 521 40.3
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 5.8e-86 322.8 686 35.1
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.3e-82 310.8 529 36.7
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.0e-78 297.7 655 33.9
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 2.6e-78 297.4 529 36.5
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.5e-76 290.8 351 45.6
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.2e-76 290.4 536 36.6
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.7e-72 276.9 538 34.4
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.7e-72 276.9 538 34.4
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.7e-72 276.9 524 34.9
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.0e-66 257.3 610 32.1
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.4e-65 253.4 528 33.1
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.8e-64 250.8 556 32.6
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.0e-49 201.4 304 45.7
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.4e-47 195.3 246 41.9
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 3.5e-46 190.7 423 36.4
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 1.9e-44 184.9 434 37.6
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 7.5e-41 172.9 201 52.7
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 4.7e-19 100.5 72 65.3
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 4.0e-18 97.4 147 36.7
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 6.0e-14 83.6 206 29.6
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 7.3e-12 76.6 206 36.4
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.8e-10 72.0 51 56.9
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 6.8e-10 70.1 52 53.8
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 6.8e-10 70.1 52 53.8
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 3.7e-08 64.3 50 58.0
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 8.3e-08 63.2 51 51.0
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 9.2e-07 59.7 50 44.0


User provided reference genes

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