Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 2.1e-222 775.4 389 100.0
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 1.2e-134 483.8 401 64.3
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 1.8e-133 479.9 401 63.3
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 1.9e-130 469.9 399 62.9
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 1.6e-121 440.3 399 60.2
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.2e-118 430.6 409 57.0
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 4.0e-117 425.6 408 56.6
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 5.2e-117 425.2 396 58.1
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 7.6e-116 421.4 396 57.1
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 7.6e-116 421.4 399 56.6
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 3.8e-115 419.1 399 58.4
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 3.8e-115 419.1 401 58.1
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 2.4e-114 416.4 392 56.1
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 9.3e-114 414.5 410 56.1
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.2e-113 414.1 399 57.6
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 3.5e-113 412.5 396 57.3
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 6.0e-113 411.8 391 57.3
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.7e-112 410.2 392 54.8
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 3.0e-112 409.5 391 57.8
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 5.1e-112 408.7 398 56.8
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 6.6e-112 408.3 402 54.2
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 8.7e-112 407.9 404 56.2
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 8.7e-112 407.9 369 59.3
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 1.1e-111 407.5 393 57.0
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.5e-111 407.1 397 56.7
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 2.5e-111 406.4 409 55.3
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 2.5e-111 406.4 391 57.8
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 3.3e-111 406.0 404 56.2
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 4.3e-111 405.6 400 56.0
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 1.6e-110 403.7 391 57.8
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 1.6e-110 403.7 391 57.3
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-109 401.0 389 55.3
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 1.8e-109 400.2 392 54.1
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.8e-109 400.2 421 53.2
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 3.1e-109 399.4 400 56.0
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 3.1e-109 399.4 390 55.4
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 3.1e-109 399.4 402 55.5
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 4.0e-109 399.1 394 55.3
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.0e-109 399.1 394 55.3
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.0e-109 399.1 394 55.8
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 4.0e-109 399.1 392 55.1
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 5.3e-109 398.7 398 54.8
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 5.3e-109 398.7 400 54.2
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 9.0e-109 397.9 398 55.0
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.2e-108 397.5 404 55.4
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.2e-108 397.5 394 55.1
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 2.0e-108 396.7 395 54.7
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 2.0e-108 396.7 398 56.3
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 1.3e-107 394.0 393 55.0
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 2.2e-107 393.3 395 55.2
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 4.9e-107 392.1 389 55.0
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 6.4e-107 391.7 394 55.3
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 8.4e-107 391.3 404 53.5
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.1e-106 391.0 389 54.0
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.9e-106 390.2 394 54.1
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.9e-106 390.2 394 54.1
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 5.4e-106 388.7 399 53.4
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 1.2e-105 387.5 399 54.4
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 1.2e-105 387.5 396 52.5
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 3.5e-105 386.0 393 56.5
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 6.0e-105 385.2 395 54.2
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 7.8e-105 384.8 408 53.7
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 7.8e-105 384.8 406 53.4
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.3e-104 384.0 390 52.1
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 2.3e-104 383.3 390 53.3
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 8.7e-104 381.3 404 54.2
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.1e-103 380.9 404 51.5
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.5e-103 380.6 394 54.6
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 1.5e-103 380.6 385 53.8
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 4.3e-103 379.0 407 50.9
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.3e-102 377.5 401 52.4
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.6e-102 377.1 382 52.6
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.6e-102 377.1 392 53.3
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.1e-102 376.7 401 52.4
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.1e-102 376.7 396 52.8
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 3.6e-102 375.9 387 54.5
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 1.8e-101 373.6 394 52.3
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 2.4e-101 373.2 451 49.7
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.1e-101 372.9 395 52.7
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.1e-101 372.9 403 52.6
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 5.3e-101 372.1 385 53.2
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 6.9e-101 371.7 392 52.8
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 9.0e-101 371.3 395 51.1
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 1.5e-100 370.5 387 52.7
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.0e-100 370.2 422 49.8
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 3.4e-100 369.4 387 52.2
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 5.8e-100 368.6 397 53.4
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 7.6e-100 368.2 399 51.9
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 9.9e-100 367.9 460 48.3
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 2.2e-99 366.7 385 52.5
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 2.2e-99 366.7 375 55.2
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 2.9e-99 366.3 404 53.7
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 6.4e-99 365.2 387 53.2
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.6e-97 360.5 398 53.0
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 3.9e-96 355.9 393 51.4
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.4e-93 347.4 395 51.1
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 2.0e-92 343.6 412 48.8
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 3.4e-92 342.8 394 50.3
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 1.0e-91 341.3 395 47.8
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 3.0e-88 329.7 408 46.8
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 2.1e-86 323.6 395 47.6
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.7e-86 322.8 316 58.2
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 2.4e-85 320.1 446 44.4
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 3.8e-83 312.8 386 48.4
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 6.5e-83 312.0 468 43.8
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.9e-82 310.5 265 60.0
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 3.7e-78 296.2 305 54.1
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.1e-77 294.7 346 49.4
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 1.5e-76 290.8 427 41.9
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 4.5e-76 289.3 403 43.7
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 5.5e-74 282.3 284 52.8
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.1e-71 274.6 395 45.6
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 2.9e-67 260.0 240 60.4
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.0e-64 251.5 440 38.0
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 4.4e-63 246.1 374 41.7
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 2.8e-62 243.4 456 35.7
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 4.8e-62 242.7 390 41.0
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.5e-60 237.7 365 42.5
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 5.9e-60 235.7 404 38.1
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 7.5e-55 218.8 398 37.9
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 6.3e-54 215.7 212 55.7
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 1.9e-50 204.1 187 62.0
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.2e-44 184.9 266 37.6
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.6e-44 184.5 181 52.5
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 3.8e-43 179.9 296 40.5
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 1.9e-42 177.6 166 53.0
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 2.8e-33 147.1 167 45.5
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 2.0e-31 141.0 155 48.4
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 3.4e-31 140.2 301 34.9
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 2.9e-30 137.1 176 44.3
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 2.7e-28 130.6 114 55.3
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 2.0e-23 114.4 174 46.6
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 1.4e-21 108.2 165 44.2
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 2.8e-17 94.0 92 50.0
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 7.5e-15 85.9 65 63.1
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 1.3e-14 85.1 136 36.0
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 1.3e-14 85.1 65 63.1
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 7.1e-13 79.3 390 23.3
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.3e-11 74.3 53 66.0
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 3.0e-11 73.9 114 39.5
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 6.6e-11 72.8 56 64.3
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 6.6e-11 72.8 56 64.3
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 9.5e-10 68.9 103 44.7
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 9.5e-10 68.9 103 44.7
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 1.5e-07 61.6 79 38.0
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.0e-07 61.2 154 36.4


User provided reference genes

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