Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 5.5e-167 590.9 299 100.0
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 2.4e-122 442.6 299 75.3
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 4.5e-116 421.8 300 73.0
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 3.9e-112 408.7 300 70.3
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 3.3e-111 405.6 312 67.0
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 5.6e-111 404.8 291 70.4
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 4.8e-110 401.7 289 70.9
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 6.2e-110 401.4 287 70.4
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 1.8e-109 399.8 287 70.4
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 2.6e-108 396.0 287 69.7
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 9.9e-108 394.0 300 68.7
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 2.2e-107 392.9 297 67.7
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 4.9e-107 391.7 292 68.2
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.4e-106 389.4 269 70.6
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 4.2e-106 388.7 292 68.2
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 5.5e-106 388.3 296 68.2
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 1.2e-105 387.1 296 66.9
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.2e-105 387.1 299 66.6
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 2.1e-105 386.3 299 67.2
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 6.0e-105 384.8 298 65.4
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.0e-104 384.0 264 72.7
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.0e-104 384.0 298 65.8
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 1.0e-104 384.0 300 67.0
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 1.3e-104 383.6 298 66.1
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 2.3e-104 382.9 241 76.8
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 3.0e-104 382.5 297 67.3
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 3.9e-104 382.1 296 65.2
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 6.7e-104 381.3 260 72.3
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 6.7e-104 381.3 265 71.3
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 1.1e-103 380.6 265 70.2
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 2.5e-103 379.4 321 63.2
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 4.3e-103 378.6 246 74.4
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 4.3e-103 378.6 296 65.2
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.3e-103 378.6 270 70.4
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 5.6e-103 378.3 287 69.3
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 7.4e-103 377.9 264 72.3
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 7.4e-103 377.9 293 67.2
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.6e-102 376.7 265 70.6
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 2.1e-102 376.3 239 76.6
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.8e-102 375.9 241 75.5
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 2.8e-102 375.9 300 64.7
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 6.2e-102 374.8 299 65.9
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 6.2e-102 374.8 271 70.1
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 3.1e-101 372.5 243 75.7
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 4.0e-101 372.1 238 76.1
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 4.0e-101 372.1 271 67.9
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 4.0e-101 372.1 296 65.2
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 2.0e-100 369.8 272 68.8
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 2.0e-100 369.8 304 65.8
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 2.0e-100 369.8 286 66.1
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 3.4e-100 369.0 290 66.2
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 4.5e-100 368.6 243 74.1
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 7.6e-100 367.9 281 66.5
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 7.6e-100 367.9 243 74.5
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.0e-99 367.5 285 65.3
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 8.4e-99 364.4 301 62.8
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 3.2e-98 362.5 268 69.4
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 4.2e-98 362.1 317 60.3
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 4.2e-98 362.1 243 74.9
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 7.1e-98 361.3 299 63.5
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 9.3e-98 360.9 286 65.7
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 1.2e-97 360.5 244 72.1
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 6.0e-97 358.2 296 62.2
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 6.0e-97 358.2 296 62.5
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 6.0e-97 358.2 260 71.2
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 1.8e-96 356.7 223 77.6
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 1.8e-96 356.7 246 71.5
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 2.3e-96 356.3 299 63.2
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 5.1e-96 355.1 296 60.8
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 8.7e-96 354.4 290 62.8
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 8.7e-96 354.4 293 62.1
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 1.5e-95 353.6 296 60.5
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 1.5e-95 353.6 299 62.9
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 2.5e-95 352.8 290 62.8
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 7.4e-95 351.3 290 62.8
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.3e-94 350.5 259 66.0
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 8.2e-94 347.8 224 75.9
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 1.4e-93 347.1 221 76.5
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 2.0e-92 343.2 271 66.1
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 1.7e-91 340.1 257 66.9
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 3.8e-91 339.0 236 70.8
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 8.5e-91 337.8 243 68.3
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 4.2e-90 335.5 254 66.9
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 1.6e-89 333.6 299 60.5
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.6e-89 333.6 281 63.3
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 6.1e-89 331.6 247 68.8
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 3.0e-88 329.3 224 73.2
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 6.7e-88 328.2 242 67.4
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 3.3e-87 325.9 197 78.7
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 1.7e-86 323.6 224 70.1
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 2.2e-86 323.2 265 64.9
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 5.3e-85 318.5 304 56.9
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 1.4e-82 310.5 275 59.6
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 2.1e-81 306.6 347 51.3
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 2.7e-81 306.2 234 66.2
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 3.3e-79 299.3 236 64.0
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 2.2e-78 296.6 194 75.3
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 1.5e-76 290.4 198 71.7
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 2.6e-76 289.7 173 79.8
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 7.7e-76 288.1 298 54.4
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 5.5e-74 282.0 204 69.1
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.0e-72 277.7 192 70.8
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 5.7e-71 271.9 291 52.9
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 1.8e-69 266.9 224 63.4
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 5.3e-69 265.4 176 73.3
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.7e-67 260.4 243 54.7
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 1.9e-58 230.3 223 56.1
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 5.5e-58 228.8 221 49.8
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 7.2e-58 228.4 231 47.6
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 1.2e-57 227.6 224 50.9
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 4.2e-50 202.6 197 56.3
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 3.6e-49 199.5 167 59.3
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 1.5e-47 194.1 219 49.8
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 3.4e-39 166.4 276 39.9
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.7e-38 164.1 150 59.3
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 3.1e-32 143.3 92 73.9
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 7.8e-28 128.6 93 67.7
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-25 120.9 134 51.5
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 1.7e-22 110.9 134 47.8
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.7e-22 110.9 168 41.1
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 4.9e-22 109.4 73 74.0
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.9e-21 107.5 75 66.7
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-20 104.4 109 49.5
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 6.6e-19 99.0 134 44.0
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 4.3e-18 96.3 151 43.0
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 1.2e-17 94.7 79 62.0
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 1.2e-17 94.7 167 38.3
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 1.2e-17 94.7 59 76.3
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 2.4e-16 90.5 93 52.7
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 1.2e-15 88.2 244 29.1
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 5.8e-15 85.9 50 76.0
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 2.9e-14 83.6 89 50.6
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 8.4e-14 82.0 55 70.9
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 1.4e-13 81.3 198 37.4
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 4.2e-13 79.7 205 32.7
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 6.0e-12 75.9 59 59.3
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 1.0e-11 75.1 49 69.4
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 2.3e-11 73.9 56 64.3
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 2.3e-11 73.9 56 64.3
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 2.3e-11 73.9 102 42.2
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.6e-09 67.8 48 66.7
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 6.9e-08 62.4 93 40.9
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 9.0e-08 62.0 188 26.1
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 1.2e-07 61.6 233 21.0
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 2.0e-07 60.8 56 60.7
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 2.6e-07 60.5 99 38.4
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.3e-06 58.2 253 22.1
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 3.8e-06 56.6 216 21.8
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 4.9e-06 56.2 227 22.0
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 6.4e-06 55.8 220 20.0


User provided reference genes

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