Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 2.4e-226 788.5 393 100.0
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 1.7e-184 649.4 387 82.4
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 2.0e-180 636.0 387 82.4
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 5.7e-180 634.4 383 81.2
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 3.2e-178 628.6 387 80.9
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 5.9e-177 624.4 387 79.8
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 2.5e-175 619.0 422 75.4
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 5.6e-175 617.8 408 76.0
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 2.3e-173 612.5 386 79.0
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 3.4e-172 608.6 380 77.9
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 2.9e-171 605.5 388 77.1
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 1.1e-170 603.6 371 79.2
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 3.2e-170 602.1 389 76.6
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 5.4e-170 601.3 389 76.9
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 2.0e-169 599.4 389 76.1
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 8.6e-168 594.0 373 77.5
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 8.6e-168 594.0 378 76.7
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 1.1e-167 593.6 382 77.5
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 1.1e-167 593.6 380 76.1
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 7.3e-167 590.9 402 74.9
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.6e-166 589.7 376 77.7
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.8e-166 589.0 376 76.6
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 4.7e-166 588.2 353 80.7
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 2.3e-165 585.9 372 77.2
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 2.0e-164 582.8 383 74.9
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 2.0e-164 582.8 377 76.7
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.7e-163 579.7 367 76.8
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 2.2e-163 579.3 352 79.8
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 3.7e-163 578.6 352 79.5
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 4.9e-163 578.2 394 72.8
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 4.9e-163 578.2 354 80.2
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 6.4e-163 577.8 380 75.0
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 8.3e-163 577.4 383 73.4
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 1.9e-162 576.2 353 80.5
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 2.4e-162 575.9 364 75.8
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 2.4e-162 575.9 391 74.2
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 4.1e-162 575.1 379 75.2
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 5.4e-162 574.7 365 75.6
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 1.2e-161 573.5 389 73.3
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 1.6e-161 573.2 353 78.8
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 2.1e-161 572.8 353 79.9
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.7e-161 572.4 351 78.6
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 2.7e-161 572.4 353 79.6
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 2.7e-161 572.4 353 79.6
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 6.6e-160 567.8 370 75.1
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 1.5e-159 566.6 371 74.1
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 3.3e-159 565.5 374 75.4
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 3.3e-159 565.5 388 72.9
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 3.3e-159 565.5 389 73.5
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 3.3e-159 565.5 367 75.5
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 5.6e-159 564.7 343 78.7
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 1.2e-158 563.5 377 73.7
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 1.2e-158 563.5 393 71.5
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 2.1e-158 562.8 388 71.9
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 8.1e-158 560.8 356 77.0
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 8.1e-158 560.8 356 76.7
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 2.6e-156 555.8 377 72.9
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 2.6e-156 555.8 380 72.6
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 5.8e-156 554.7 343 77.8
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 5.8e-156 554.7 343 77.8
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 9.9e-156 553.9 353 74.8
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 1.3e-155 553.5 343 77.0
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.3e-155 553.5 343 77.0
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 1.7e-155 553.1 377 72.9
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 2.2e-155 552.7 369 74.0
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 3.8e-155 552.0 384 71.4
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 4.9e-155 551.6 372 73.7
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 4.9e-155 551.6 377 72.7
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 1.1e-154 550.4 356 75.3
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.4e-154 550.1 357 74.8
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 1.9e-154 549.7 382 72.0
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 1.9e-154 549.7 343 76.1
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 4.1e-154 548.5 356 75.3
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 4.1e-154 548.5 364 74.7
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 5.4e-154 548.1 343 77.0
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 5.4e-154 548.1 352 75.3
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 7.1e-154 547.7 386 71.0
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 1.2e-153 547.0 351 75.2
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 3.5e-153 545.4 343 75.2
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 4.6e-153 545.0 367 73.8
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 1.0e-152 543.9 346 74.9
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 1.3e-152 543.5 343 74.9
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 1.7e-152 543.1 371 73.0
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 5.1e-152 541.6 343 75.5
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 8.6e-152 540.8 327 79.8
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 8.6e-152 540.8 343 75.5
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 1.1e-151 540.4 357 73.4
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.1e-151 540.4 343 75.2
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 1.1e-151 540.4 343 74.9
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 1.5e-151 540.0 340 76.2
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 1.5e-151 540.0 343 74.3
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.9e-151 539.7 370 71.4
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 3.3e-151 538.9 343 74.6
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 3.3e-151 538.9 355 73.8
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 2.1e-150 536.2 371 71.7
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 4.7e-150 535.0 376 71.8
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 8.1e-150 534.3 378 70.1
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 1.4e-149 533.5 380 68.4
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 8.9e-149 530.8 371 70.9
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 2.6e-148 529.3 356 69.9
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 3.4e-148 528.9 360 71.4
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 9.9e-148 527.3 362 72.1
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 2.2e-147 526.2 314 80.6
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.4e-146 523.5 362 70.7
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.9e-146 523.1 355 72.1
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 3.3e-143 512.3 378 70.1
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 8.1e-142 507.7 383 67.1
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 2.6e-140 502.7 314 78.3
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 5.8e-140 501.5 452 61.1
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 9.9e-140 500.7 384 65.1
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 4.9e-139 498.4 377 66.8
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 7.1e-138 494.6 353 71.7
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.0e-136 490.7 292 81.5
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.8e-136 490.0 353 71.1
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.4e-133 480.3 573 48.2
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 3.0e-128 462.6 344 64.5
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 9.6e-127 457.6 350 63.7
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 3.2e-114 416.0 287 70.7
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.9e-111 406.8 361 61.8
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 8.8e-80 301.6 194 76.8
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 2.5e-66 256.9 373 41.6
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 6.8e-64 248.8 147 78.2
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 9.8e-63 245.0 298 51.3
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 1.3e-59 234.6 161 68.3
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 2.0e-52 210.7 186 62.4
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 3.4e-47 193.4 172 59.9
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 7.5e-47 192.2 112 82.1
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 1.1e-40 171.8 112 73.2
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 4.0e-32 143.3 345 30.7
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.7e-30 137.9 81 76.5
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 1.3e-27 128.3 98 65.3
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 1.1e-24 118.6 66 77.3
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.1e-13 82.0 53 73.6
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 1.2e-12 78.6 93 50.5
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 6.2e-09 66.2 45 66.7
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 1.3e-06 58.5 64 48.4


User provided reference genes

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