Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 2.7e-36 154.8 80 100.0
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 6.9e-32 140.2 80 87.5
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 3.4e-31 137.9 80 86.2
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 5.9e-31 137.1 80 85.0
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 7.7e-31 136.7 80 85.0
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.0e-30 136.3 80 83.8
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.7e-30 135.6 80 83.8
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 2.9e-30 134.8 80 82.5
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 2.9e-30 134.8 80 83.8
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 2.9e-30 134.8 80 83.8
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 2.9e-30 134.8 80 83.8
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 2.9e-30 134.8 80 83.8
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 2.9e-30 134.8 78 84.6
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 3.8e-30 134.4 80 82.5
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 3.8e-30 134.4 80 82.5
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 3.8e-30 134.4 80 82.5
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.8e-30 134.4 80 82.5
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.8e-30 134.4 80 82.5
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 3.8e-30 134.4 80 82.5
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 3.8e-30 134.4 80 82.5
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 5.0e-30 134.0 78 85.9
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 5.0e-30 134.0 80 83.8
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 5.0e-30 134.0 80 83.8
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 5.0e-30 134.0 80 83.8
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 6.5e-30 133.7 80 82.5
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 6.5e-30 133.7 80 83.8
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 6.5e-30 133.7 80 81.2
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 6.5e-30 133.7 80 82.5
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 8.5e-30 133.3 80 81.2
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 8.5e-30 133.3 80 81.2
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 8.5e-30 133.3 80 82.5
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 8.5e-30 133.3 80 81.2
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 8.5e-30 133.3 80 81.2
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 8.5e-30 133.3 80 82.5
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 1.1e-29 132.9 80 81.2
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-29 132.9 80 81.2
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-29 132.9 80 81.2
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-29 132.9 80 81.2
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-29 132.9 80 81.2
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 1.1e-29 132.9 80 82.5
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.1e-29 132.9 80 81.2
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.4e-29 132.5 80 81.2
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 1.4e-29 132.5 80 81.2
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.4e-29 132.5 80 81.2
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.4e-29 132.5 80 81.2
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.9e-29 132.1 80 81.2
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 1.9e-29 132.1 80 82.5
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 1.9e-29 132.1 80 81.2
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.9e-29 132.1 80 81.2
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 2.5e-29 131.7 80 80.0
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 2.5e-29 131.7 80 80.0
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 2.5e-29 131.7 80 78.8
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 2.5e-29 131.7 80 80.0
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.5e-29 131.7 80 81.2
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 3.2e-29 131.3 80 81.2
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.2e-29 131.3 80 81.2
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 3.2e-29 131.3 80 81.2
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 3.2e-29 131.3 80 81.2
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 3.2e-29 131.3 80 80.0
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 3.2e-29 131.3 80 81.2
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 3.2e-29 131.3 80 81.2
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 4.2e-29 131.0 80 81.2
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 4.2e-29 131.0 80 81.2
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 4.2e-29 131.0 80 81.2
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 4.2e-29 131.0 80 81.2
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 4.2e-29 131.0 80 81.2
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 4.2e-29 131.0 80 81.2
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 7.2e-29 130.2 80 80.0
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 7.2e-29 130.2 80 80.0
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 1.2e-28 129.4 80 81.2
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 1.6e-28 129.0 80 78.8
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 2.1e-28 128.6 80 80.0
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 2.1e-28 128.6 80 78.8
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 2.7e-28 128.3 80 81.2
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 3.6e-28 127.9 80 78.8
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 3.6e-28 127.9 80 78.8
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 3.6e-28 127.9 80 78.8
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 4.6e-28 127.5 80 77.5
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 4.6e-28 127.5 78 79.5
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 4.6e-28 127.5 80 80.0
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 6.1e-28 127.1 80 76.2
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 7.9e-28 126.7 80 77.5
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.0e-27 126.3 80 78.8
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.0e-27 126.3 80 78.8
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 1.4e-27 125.9 80 77.5
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.4e-27 125.9 74 83.8
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.4e-27 125.9 74 83.8
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.4e-27 125.9 80 78.8
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 2.3e-27 125.2 80 77.5
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 3.0e-27 124.8 74 82.4
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 3.0e-27 124.8 74 82.4
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 3.0e-27 124.8 74 82.4
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 3.0e-27 124.8 74 82.4
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 5.1e-27 124.0 74 79.7
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 6.7e-27 123.6 80 75.0
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.1e-26 122.9 74 81.1
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.1e-26 122.9 80 77.5
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 2.0e-26 122.1 77 76.6
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 3.3e-26 121.3 77 75.3
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 9.7e-26 119.8 80 73.8
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 9.7e-26 119.8 78 74.4
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 1.3e-25 119.4 76 76.3
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 2.2e-25 118.6 64 90.6
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 2.2e-25 118.6 64 90.6
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 2.8e-25 118.2 74 78.4
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.8e-25 118.2 74 78.4
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 3.7e-25 117.9 76 76.3
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 3.7e-25 117.9 76 76.3
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 8.2e-25 116.7 69 84.1
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 1.1e-24 116.3 64 85.9
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 1.4e-24 115.9 76 75.0
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 3.1e-24 114.8 64 85.9
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 4.1e-24 114.4 64 84.4
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 6.9e-24 113.6 78 73.1
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 9.1e-24 113.2 64 84.4
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 9.1e-24 113.2 64 84.4
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 9.1e-24 113.2 75 73.3
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.2e-23 112.8 76 73.7
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.6e-23 111.7 85 69.4
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 5.9e-23 110.5 76 75.0
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 7.7e-23 110.2 61 86.9
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.3e-22 109.4 80 66.2
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 2.2e-22 108.6 72 77.8
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 2.2e-22 108.6 71 77.5
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 8.5e-22 106.7 64 79.7
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 3.2e-21 104.8 80 62.5
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 3.2e-21 104.8 74 68.9
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 9.4e-21 103.2 64 78.1
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 4.7e-20 100.9 58 82.8
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 7.9e-20 100.1 80 60.0
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 4.8e-17 90.9 60 71.7
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.8e-16 89.0 57 71.9
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 1.5e-13 79.3 46 78.3
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 5.5e-13 77.4 46 80.4
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.6e-12 75.9 46 78.3
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 3.0e-11 71.6 57 64.9
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.4e-10 67.8 68 47.1
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 7.5e-10 67.0 56 58.9
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 5.0e-06 54.3 38 65.8


User provided reference genes

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