Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 2.8e-98 362.1 198 100.0
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 4.2e-86 321.6 198 85.9
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 9.3e-86 320.5 198 85.9
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 5.6e-83 311.2 189 85.7
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 7.3e-83 310.8 198 81.8
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 6.4e-79 297.7 198 79.8
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 7.1e-78 294.3 196 80.1
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 9.3e-78 293.9 198 78.8
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 6.0e-77 291.2 197 78.2
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 7.9e-77 290.8 198 77.3
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 1.3e-76 290.0 198 78.8
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 1.3e-76 290.0 194 77.8
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.7e-76 289.7 198 78.3
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 2.3e-76 289.3 198 78.8
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.5e-75 286.6 197 77.2
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.5e-75 286.6 198 75.8
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 2.5e-75 285.8 197 75.6
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 2.5e-75 285.8 197 75.6
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 2.5e-75 285.8 197 75.6
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 3.3e-75 285.4 194 77.8
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 4.3e-75 285.0 194 77.8
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 4.3e-75 285.0 197 77.2
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 4.3e-75 285.0 198 75.8
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 4.3e-75 285.0 198 74.7
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 7.3e-75 284.3 194 77.8
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 9.6e-75 283.9 198 77.3
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 9.6e-75 283.9 198 77.8
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.6e-74 283.1 198 76.3
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 1.6e-74 283.1 195 76.9
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 2.1e-74 282.7 198 77.3
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 2.1e-74 282.7 198 74.2
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 2.1e-74 282.7 193 77.2
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 2.8e-74 282.3 198 77.3
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 3.6e-74 282.0 198 76.3
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 3.6e-74 282.0 196 76.0
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 4.8e-74 281.6 198 76.8
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 6.2e-74 281.2 198 75.8
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 6.2e-74 281.2 194 77.3
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 1.1e-73 280.4 196 77.6
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 1.4e-73 280.0 195 77.4
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 1.8e-73 279.6 195 77.4
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 1.8e-73 279.6 195 76.4
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 1.8e-73 279.6 195 77.4
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 2.4e-73 279.3 195 77.4
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 4.0e-73 278.5 195 76.9
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 4.0e-73 278.5 198 76.3
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 5.3e-73 278.1 195 77.4
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 5.3e-73 278.1 195 76.4
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 6.9e-73 277.7 198 73.7
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 6.9e-73 277.7 190 79.5
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 1.5e-72 276.6 196 75.0
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 1.5e-72 276.6 195 76.4
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 1.5e-72 276.6 195 74.9
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 1.5e-72 276.6 195 74.9
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 1.5e-72 276.6 196 75.5
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 2.6e-72 275.8 189 78.8
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.6e-72 275.8 193 76.2
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.6e-72 275.8 193 76.2
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 2.6e-72 275.8 189 78.8
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 2.6e-72 275.8 195 74.9
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 3.4e-72 275.4 194 75.8
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 3.4e-72 275.4 195 74.4
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 3.4e-72 275.4 189 78.3
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 3.4e-72 275.4 196 75.0
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 4.5e-72 275.0 195 75.4
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 4.5e-72 275.0 193 76.2
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 4.5e-72 275.0 189 78.3
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 5.8e-72 274.6 193 75.6
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 5.8e-72 274.6 195 74.4
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 5.8e-72 274.6 192 75.5
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 7.6e-72 274.2 189 78.8
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 9.9e-72 273.9 189 78.3
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 1.3e-71 273.5 189 78.8
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 1.3e-71 273.5 189 78.3
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 1.7e-71 273.1 193 75.1
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 2.9e-71 272.3 194 74.7
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 6.4e-71 271.2 194 74.2
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 6.4e-71 271.2 195 75.9
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 8.4e-71 270.8 193 75.1
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 1.1e-70 270.4 189 76.2
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 1.9e-70 269.6 192 73.4
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 2.4e-70 269.2 190 75.3
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 2.4e-70 269.2 189 77.2
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 7.1e-70 267.7 195 71.8
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 7.1e-70 267.7 195 73.8
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 9.3e-70 267.3 197 72.6
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 1.6e-66 256.5 186 73.7
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 2.1e-66 256.1 194 68.0
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 6.2e-66 254.6 174 80.5
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 4.0e-65 251.9 179 74.3
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 4.0e-65 251.9 194 70.1
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 1.2e-64 250.4 193 67.9
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 1.2e-64 250.4 195 69.2
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 1.2e-64 250.4 195 69.2
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 3.4e-64 248.8 193 70.5
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 3.4e-64 248.8 190 68.9
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 4.5e-64 248.4 183 70.5
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 6.5e-63 244.6 189 67.2
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 9.3e-62 240.7 190 68.9
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 4.6e-61 238.4 199 65.3
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 4.6e-61 238.4 201 64.7
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 7.9e-61 237.7 195 66.2
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 1.8e-60 236.5 192 65.1
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 1.8e-60 236.5 209 63.6
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 2.3e-60 236.1 194 66.5
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 3.0e-60 235.7 188 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 3.1e-57 225.7 189 63.0
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 1.9e-54 216.5 189 57.1
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 5.1e-52 208.4 124 83.1
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 8.2e-50 201.1 194 63.9
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 2.4e-49 199.5 125 81.6
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 1.3e-47 193.7 125 79.2
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 3.8e-47 192.2 200 57.5
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 9.4e-46 187.6 170 65.3
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 6.3e-42 174.9 198 55.1
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.9e-39 166.0 200 48.5
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 8.5e-39 164.5 130 71.5
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 4.7e-37 158.7 98 76.5
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 3.3e-35 152.5 123 67.5
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 7.4e-35 151.4 119 68.1
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 1.0e-31 141.0 170 43.5
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 9.7e-27 124.4 139 54.7
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 2.8e-26 122.9 106 60.4
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 8.2e-26 121.3 106 59.4
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 1.1e-25 120.9 94 64.9
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 4.2e-22 109.0 76 71.1
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.7e-18 97.1 83 69.9
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 4.1e-17 92.4 176 31.2
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 9.1e-17 91.3 84 63.1
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 2.9e-15 86.3 175 32.0
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 1.2e-13 80.9 45 82.2
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 7.5e-11 71.6 55 78.2
SGA_v2.0_scaffold472G52090 Striga asiatica HOM05D005910 ORTHO05D007088 1.3e-10 70.9 55 78.2
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 1.8e-09 67.0 43 72.1
SGA_v2.0_scaffold105G30513 Striga asiatica HOM05D000825 ORTHO05D002486 4.3e-06 55.8 84 53.6


User provided reference genes

Program Settings