Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 0.0e+00 1485.3 757 100.0
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.3e-119 434.9 813 38.9
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 3.5e-101 373.6 800 36.6
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 1.4e-94 351.7 785 36.2
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 7.4e-91 339.3 912 33.8
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.7e-82 310.5 756 35.3
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 6.2e-82 309.7 749 35.2
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 2.6e-80 304.3 742 34.0
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.5e-78 297.7 742 33.8
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 2.5e-78 297.7 758 33.2
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 3.2e-78 297.4 739 33.8
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 3.5e-77 293.9 790 33.9
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 5.1e-76 290.0 749 33.4
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 5.1e-76 290.0 751 34.8
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.1e-75 288.9 742 33.2
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 5.7e-75 286.6 776 32.3
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 6.9e-73 279.6 779 32.7
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 1.7e-71 275.0 747 34.0
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.7e-71 275.0 760 31.1
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.2e-71 274.6 757 31.4
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 3.8e-71 273.9 758 32.1
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 3.2e-70 270.8 747 33.7
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 4.2e-70 270.4 770 32.2
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 2.1e-69 268.1 746 32.3
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 2.7e-69 267.7 784 31.4
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 3.6e-69 267.3 870 29.7
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 4.6e-69 266.9 756 32.0
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 7.9e-69 266.2 785 32.6
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.0e-68 265.8 797 31.6
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 1.4e-68 265.4 743 33.9
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 1.8e-68 265.0 804 31.8
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.1e-68 263.5 778 31.0
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 5.1e-68 263.5 768 32.2
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 6.7e-68 263.1 897 29.7
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.1e-67 262.3 747 31.3
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 3.3e-67 260.8 909 29.9
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 4.3e-67 260.4 786 31.0
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.3e-67 260.4 778 30.5
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 9.7e-67 259.2 783 29.9
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 2.2e-66 258.1 884 29.8
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 2.2e-66 258.1 736 31.4
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.8e-66 257.7 745 31.0
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 4.8e-66 256.9 764 31.3
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 6.3e-66 256.5 774 30.9
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.1e-65 255.8 738 32.2
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.4e-65 255.4 781 30.5
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 2.4e-65 254.6 746 32.2
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 3.1e-65 254.2 736 31.5
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 4.1e-65 253.8 774 29.3
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 5.3e-65 253.4 753 31.6
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.5e-64 251.9 744 31.7
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.5e-64 251.9 762 31.8
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.5e-64 251.9 673 32.4
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 2.0e-64 251.5 747 31.6
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 3.4e-64 250.8 763 31.2
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.5e-64 250.4 774 29.5
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 7.7e-64 249.6 731 32.0
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 1.0e-63 249.2 750 31.6
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 2.9e-63 247.7 800 30.6
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.1e-62 245.7 785 29.9
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 7.2e-62 243.0 733 31.9
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 9.4e-62 242.7 788 30.8
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 2.7e-61 241.1 737 31.1
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 6.1e-61 240.0 710 31.8
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 6.1e-61 240.0 746 31.0
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.0e-60 239.2 733 30.6
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.8e-60 238.4 727 31.2
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 3.9e-60 237.3 725 31.2
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 3.9e-60 237.3 694 31.0
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 6.7e-60 236.5 774 28.7
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.1e-59 235.7 733 32.5
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 2.2e-58 231.5 723 30.3
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 1.4e-57 228.8 742 29.1
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 2.4e-57 228.0 727 30.9
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 1.2e-56 225.7 807 29.7
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 5.9e-56 223.4 725 30.8
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 2.2e-55 221.5 728 30.4
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.9e-55 221.1 788 28.8
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 5.0e-55 220.3 729 30.6
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 1.1e-54 219.2 724 30.2
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 5.5e-54 216.9 795 30.2
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 5.5e-54 216.9 749 29.8
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 5.5e-54 216.9 847 28.5
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 2.7e-53 214.5 644 30.0
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.8e-52 211.8 753 29.9
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.4e-51 207.2 740 29.5
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 7.4e-51 206.5 734 30.5
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 1.3e-50 205.7 880 26.0
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 1.7e-50 205.3 777 28.1
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 8.2e-50 203.0 781 27.9
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 8.2e-50 203.0 737 29.2
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.1e-49 202.6 645 29.6
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.1e-49 202.6 730 27.9
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 1.8e-49 201.8 726 29.2
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 3.1e-49 201.1 754 29.8
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.2e-48 199.1 799 28.3
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.6e-48 198.7 717 29.1
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 2.0e-48 198.4 479 32.8
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.5e-48 197.2 744 28.1
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 4.5e-48 197.2 737 28.1
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 5.9e-48 196.8 602 30.9
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.7e-47 195.3 748 29.7
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 1.7e-47 195.3 797 28.1
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.2e-45 189.1 823 28.7
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.4e-44 185.7 757 27.2
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 4.0e-44 184.1 682 31.2
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 4.4e-43 180.6 763 27.8
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 7.5e-43 179.9 601 29.3
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 1.7e-42 178.7 730 28.1
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 1.6e-40 172.2 368 36.7
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 2.0e-40 171.8 454 33.3
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 2.7e-40 171.4 765 26.1
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 4.5e-40 170.6 522 32.8
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.2e-39 168.3 457 34.4
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 5.0e-39 167.2 624 28.4
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 8.5e-39 166.4 349 39.5
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.1e-38 166.0 355 39.2
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 3.6e-37 161.0 765 26.5
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.8e-36 158.7 840 25.2
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.7e-34 152.1 772 26.0
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.7e-34 152.1 609 28.1
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.8e-34 150.6 605 26.8
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 6.3e-34 150.2 610 29.5
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 9.1e-33 146.4 314 36.9
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.2e-32 146.0 467 31.3
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.6e-32 145.6 610 27.5
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 7.2e-30 136.7 722 25.6
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 1.2e-29 136.0 612 27.3
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.4e-28 132.5 394 28.7
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.3e-28 131.7 351 31.6
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 3.4e-27 127.9 475 31.4
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 4.9e-26 124.0 237 36.3
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 7.8e-24 116.7 171 48.0
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 5.0e-23 114.0 738 24.1
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 8.6e-23 113.2 668 24.6
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 8.9e-20 103.2 322 27.6
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 8.9e-20 103.2 400 27.8
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 1.2e-19 102.8 156 37.8
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.4e-19 101.3 164 38.4
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 4.4e-19 100.9 274 28.5
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 1.3e-18 99.4 174 42.0
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 1.2e-16 92.8 294 31.0
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.2e-16 92.8 82 56.1
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 5.6e-14 84.0 182 35.2
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 9.5e-14 83.2 115 40.0
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 9.5e-14 83.2 64 60.9
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.3e-12 78.6 87 47.1
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.0e-12 77.8 87 47.1
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.9e-12 76.6 189 33.9
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.2e-11 76.3 189 33.9
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 7.5e-11 73.6 150 32.0
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 7.5e-11 73.6 118 37.3
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.3e-10 72.8 241 30.7
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 1.9e-09 68.9 61 54.1
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 7.8e-08 63.5 408 25.2
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 3.9e-07 61.2 407 26.0
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 6.6e-07 60.5 219 33.8
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 6.6e-07 60.5 110 36.4
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 7.3e-06 57.0 392 26.3


User provided reference genes

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