Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 9.0e-193 676.8 352 100.0
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 2.4e-92 343.2 262 74.4
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 9.1e-60 235.0 258 54.7
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 2.6e-59 233.4 248 59.7
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 5.0e-58 229.2 277 55.2
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.0e-54 217.2 265 52.8
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.1e-52 211.5 243 55.1
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 3.8e-50 203.0 263 51.0
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 2.1e-48 197.2 247 51.4
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 3.6e-48 196.4 247 52.2
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 4.0e-47 193.0 274 47.4
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 3.4e-46 189.9 277 48.0
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 4.4e-46 189.5 254 50.0
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 4.4e-46 189.5 254 49.6
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 9.8e-46 188.3 312 45.2
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.7e-45 186.4 273 46.5
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 3.7e-45 186.4 273 46.5
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 6.3e-45 185.7 261 47.1
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.3e-45 185.7 272 46.3
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 8.3e-45 185.3 297 45.8
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.4e-44 183.7 239 48.5
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 2.7e-43 180.3 249 48.2
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 7.7e-43 178.7 249 48.2
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.0e-42 178.3 256 50.0
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.3e-42 177.9 249 48.2
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.7e-42 177.6 249 48.2
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 2.2e-42 177.2 282 43.3
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 8.5e-42 175.3 270 43.3
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.9e-41 174.1 239 48.5
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.9e-41 174.1 283 43.5
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.9e-41 174.1 278 46.0
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 1.2e-40 171.4 215 51.6
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 2.1e-40 170.6 241 48.5
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.7e-40 170.2 275 44.7
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 4.7e-40 169.5 290 44.1
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 6.1e-40 169.1 269 45.0
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.8e-39 167.5 271 46.5
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 5.2e-39 166.0 254 47.2
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 2.0e-38 164.1 260 45.0
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 3.4e-38 163.3 296 41.6
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.3e-37 161.4 265 44.9
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 2.2e-37 160.6 271 44.3
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 6.3e-37 159.1 253 46.2
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 8.3e-37 158.7 261 45.6
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.1e-36 158.3 249 43.0
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.8e-36 157.5 253 46.2
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.8e-36 157.5 260 43.8
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 3.1e-36 156.8 264 43.2
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 3.1e-36 156.8 289 42.9
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 4.1e-36 156.4 274 42.3
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 5.4e-36 156.0 259 45.9
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 7.0e-36 155.6 255 42.0
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 3.5e-35 153.3 248 44.8
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.7e-34 151.0 169 53.3
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 2.9e-34 150.2 278 42.1
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 5.0e-34 149.4 207 46.9
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 6.6e-34 149.1 240 41.2
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 6.6e-34 149.1 277 41.9
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 8.6e-34 148.7 272 42.6
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.9e-33 147.5 293 42.3
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 2.5e-33 147.1 252 44.0
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 2.5e-33 147.1 249 43.8
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 2.8e-32 143.7 209 44.5
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 3.6e-32 143.3 247 43.7
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 3.6e-32 143.3 244 46.3
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 3.6e-32 143.3 258 44.6
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 6.1e-32 142.5 305 40.3
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.4e-31 141.4 246 42.3
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.4e-31 141.4 254 44.9
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 4.0e-31 139.8 302 38.1
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 4.0e-31 139.8 302 38.1
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 5.2e-31 139.4 243 43.2
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.2e-30 138.3 245 41.2
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 4.4e-30 136.3 257 40.9
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 4.4e-30 136.3 257 40.9
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 4.4e-30 136.3 257 40.9
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 7.5e-30 135.6 256 41.0
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 9.8e-30 135.2 257 40.9
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 9.8e-30 135.2 274 39.8
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 1.3e-29 134.8 227 43.6
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.3e-29 134.8 248 41.9
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 2.9e-29 133.7 124 62.9
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 4.9e-29 132.9 234 43.2
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 6.4e-29 132.5 309 37.5
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.4e-28 130.6 262 40.1
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 3.2e-28 130.2 262 37.8
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 4.1e-28 129.8 232 41.8
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 4.1e-28 129.8 244 42.6
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 4.1e-28 129.8 256 39.5
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 7.0e-28 129.0 219 42.5
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.2e-27 128.3 95 72.6
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.6e-27 127.9 255 42.0
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 4.6e-27 126.3 94 74.5
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.3e-26 124.8 236 40.7
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 2.3e-26 124.0 216 43.1
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.3e-26 124.0 278 38.8
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 5.0e-26 122.9 222 41.9
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 5.0e-26 122.9 246 40.7
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 6.6e-26 122.5 260 38.1
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.1e-25 121.7 203 45.3
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 2.5e-25 120.6 253 40.7
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 2.5e-25 120.6 117 56.4
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 3.6e-24 116.7 77 76.6
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 8.0e-24 115.5 248 39.1
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 8.0e-24 115.5 245 39.2
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 2.3e-23 114.0 259 37.8
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 4.0e-23 113.2 303 35.6
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.5e-22 111.3 170 47.1
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.5e-22 111.3 170 47.1
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.3e-21 108.2 252 40.1
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.3e-21 108.2 102 57.8
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 2.2e-21 107.5 109 56.0
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.2e-21 107.5 102 58.8
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 6.4e-21 105.9 102 57.8
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.4e-20 104.8 176 46.6
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.9e-20 104.4 229 36.7
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 3.2e-20 103.6 102 55.9
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 7.0e-20 102.4 278 35.6
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.7e-19 100.5 244 37.3
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 2.7e-19 100.5 254 35.8
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 3.5e-19 100.1 98 60.2
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 7.8e-19 99.0 106 58.5
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 7.8e-19 99.0 98 60.2
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 1.9e-17 94.4 81 64.2
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.9e-17 94.4 267 36.7
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 8.1e-16 89.0 102 52.0
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 3.1e-15 87.0 253 35.2
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.2e-14 85.1 201 37.8
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 2.6e-14 84.0 242 35.1
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 7.5e-14 82.4 229 36.7
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 7.5e-14 82.4 226 36.7
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 7.5e-14 82.4 251 32.7
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 2.2e-13 80.9 208 37.0
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 6.4e-13 79.3 198 37.4
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 1.4e-12 78.2 203 37.9
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 4.1e-12 76.6 270 30.7
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 3.5e-11 73.6 177 36.2
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 7.8e-11 72.4 49 69.4
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.7e-10 71.2 47 70.2
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 5.1e-10 69.7 208 32.7
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 8.6e-10 68.9 58 56.9
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.1e-09 68.6 79 51.9
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.9e-09 67.8 78 46.2
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 3.3e-09 67.0 68 57.4
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 4.3e-09 66.6 261 33.0
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.2e-08 65.1 49 59.2
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 1.6e-08 64.7 106 40.6
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 2.8e-08 63.9 234 32.1
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 2.8e-08 63.9 224 32.1
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 5.2e-07 59.7 54 51.9
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.5e-06 58.2 182 33.0
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.6e-06 57.4 256 32.0
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 4.4e-06 56.6 170 32.4
SEGI_26835 Sequoiadendron giganteum HOM05D004123 ORTHO05D004768 9.9e-06 55.5 41 61.0


User provided reference genes

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