Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_22.g6220 Utricularia gibba HOM05D002091 ORTHO05D002140 2.5e-142 508.8 266 100.0
SGA_v2.0_scaffold22G09673 Striga asiatica HOM05D002091 ORTHO05D002140 2.7e-32 143.3 226 42.9
SGA_v2.0_scaffold100G29713 Striga asiatica HOM05D002091 ORTHO05D002140 3.3e-30 136.3 256 40.2
Oeu014776.1 Olea europaea HOM05D002091 ORTHO05D002140 2.2e-18 97.1 98 58.2
SalBow8G0028 Salvia bowleyana HOM05D002091 ORTHO05D002140 5.5e-17 92.4 100 52.0
Actinidia26140 Actinidia chinensis HOM05D002091 ORTHO05D002140 2.3e-15 87.0 92 53.3
Migut.M01112 Erythranthe guttata HOM05D002091 ORTHO05D002140 5.2e-15 85.9 96 55.2
Cc02_g13750 Coffea canephora HOM05D002091 ORTHO05D002140 1.1e-14 84.7 93 52.7
Cc02_g13760 Coffea canephora HOM05D002091 ORTHO05D002140 1.1e-14 84.7 92 52.2
Oeu012150.1 Olea europaea HOM05D002091 ORTHO05D002140 2.6e-14 83.6 92 54.3
Migut.H01474 Erythranthe guttata HOM05D002091 ORTHO05D002140 4.4e-14 82.8 93 49.5
HanXRQChr01g0003851 Helianthus annuus HOM05D002091 ORTHO05D002140 9.7e-14 81.6 93 49.5
unitig_21.g20216 Utricularia gibba HOM05D002091 ORTHO05D002140 1.7e-13 80.9 92 53.3
HanXRQChr03g0093701 Helianthus annuus HOM05D002091 ORTHO05D002140 2.8e-13 80.1 92 48.9
PGSC0003DMG400022808 Solanum tuberosum HOM05D002091 ORTHO05D002140 2.8e-13 80.1 92 51.1
Dinv17349 Davidia involucrata HOM05D002091 ORTHO05D002140 3.7e-13 79.7 92 53.3
SalBow7G1714 Salvia bowleyana HOM05D002091 ORTHO05D002140 3.7e-13 79.7 91 51.6
SalBow7G2518 Salvia bowleyana HOM05D002091 ORTHO05D002140 3.7e-13 79.7 91 51.6
Sopen03g002320 Solanum pennellii HOM05D002091 ORTHO05D002140 3.7e-13 79.7 91 50.5
PGSC0003DMG400012829 Solanum tuberosum HOM05D002091 ORTHO05D002140 3.7e-13 79.7 91 50.5
Hma1.2p1_0558F.1_g178560 Hydrangea macrophylla HOM05D002091 ORTHO05D002140 4.8e-13 79.3 93 53.8
SalBow6G7240 Salvia bowleyana HOM05D002091 ORTHO05D002140 6.3e-13 79.0 117 47.0
SalBow8G3934 Salvia bowleyana HOM05D002091 ORTHO05D002140 6.3e-13 79.0 117 47.0
unitig_22.g6749 Utricularia gibba HOM05D002091 ORTHO05D002140 6.3e-13 79.0 92 50.0
SalBow2G1184 Salvia bowleyana HOM05D002091 ORTHO05D002140 8.2e-13 78.6 91 51.6
Nitab4.5_0001375g0170 Nicotiana tabacum HOM05D002091 ORTHO05D002140 1.4e-12 77.8 92 52.2
Solyc10g009130.4 Solanum lycopersicum HOM05D002091 ORTHO05D002140 1.4e-12 77.8 92 50.0
Sopen10g004910 Solanum pennellii HOM05D002091 ORTHO05D002140 1.4e-12 77.8 92 50.0
vmacro15927 Vaccinium macrocarpon HOM05D002091 ORTHO05D002140 1.8e-12 77.4 91 52.7
Cc02_g13770 Coffea canephora HOM05D002091 ORTHO05D002140 4.1e-12 76.3 90 53.3
Lsat_1_v5_gn_4_51900 Lactuca sativa HOM05D002091 ORTHO05D002140 4.1e-12 76.3 104 46.2
Cc04_g09010 Coffea canephora HOM05D002091 ORTHO05D002140 5.3e-12 75.9 90 52.2
Nitab4.5_0000516g0100 Nicotiana tabacum HOM05D002091 ORTHO05D002140 7.0e-12 75.5 92 51.1
Nitab4.5_0005260g0020 Nicotiana tabacum HOM05D002091 ORTHO05D002140 1.6e-11 74.3 92 48.9
Rhsim06G0138100 Rhododendron simsii HOM05D002091 ORTHO05D002140 1.6e-11 74.3 97 46.4
unitig_61.g26089 Utricularia gibba HOM05D002091 ORTHO05D002140 1.6e-11 74.3 90 46.7
Prupe.4G051800 Prunus persica HOM05D002091 ORTHO05D002140 2.6e-11 73.6 93 50.5
CSS0017392 Camellia sinensis var. sinensis HOM05D002091 ORTHO05D002140 3.5e-11 73.2 86 47.7
Manes.17G048800 Manihot esculenta HOM05D002091 ORTHO05D002140 3.5e-11 73.2 93 50.5
TAR624G0503 Trochodendron aralioides HOM05D002091 ORTHO05D002140 3.5e-11 73.2 91 52.7
unitig_8.g3361 Utricularia gibba HOM05D002091 ORTHO05D002140 7.7e-11 72.0 92 48.9
Aa31LG6G10340 Aethionema arabicum HOM05D002091 ORTHO05D002140 1.0e-10 71.6 89 49.4
Ciclev10017075m.g Citrus clementina HOM05D002091 ORTHO05D002140 1.3e-10 71.2 141 36.2
CsaV3_5G038050 Cucumis sativus L. HOM05D002091 ORTHO05D002140 1.3e-10 71.2 92 50.0
TAR624G0411 Trochodendron aralioides HOM05D002091 ORTHO05D002140 1.7e-10 70.9 86 53.5
ClCG02G002380 Citrullus lanatus HOM05D002091 ORTHO05D002140 2.2e-10 70.5 130 36.9
Rhsim02G0133900 Rhododendron simsii HOM05D002091 ORTHO05D002140 2.2e-10 70.5 107 43.9
Solyc02g077730.3 Solanum lycopersicum HOM05D002091 ORTHO05D002140 2.9e-10 70.1 119 43.7
Sopen02g022620 Solanum pennellii HOM05D002091 ORTHO05D002140 2.9e-10 70.1 121 43.8
PGSC0003DMG400031762 Solanum tuberosum HOM05D002091 ORTHO05D002140 2.9e-10 70.1 119 43.7
Thecc.06G181700 Theobroma cacao HOM05D002091 ORTHO05D002140 2.9e-10 70.1 88 50.0
Duzib192G0619 Durio zibethinus HOM05D002091 ORTHO05D002140 3.8e-10 69.7 88 48.9
Atru.chr10.1805 Acer truncatum HOM05D002091 ORTHO05D002140 5.0e-10 69.3 92 45.7
AL1G42020 Arabidopsis lyrata HOM05D002091 ORTHO05D002140 5.0e-10 69.3 89 46.1
A08p25610 Brassica napus HOM05D002091 ORTHO05D002140 5.0e-10 69.3 104 45.2
Glyma.15G077400 Glycine max HOM05D002091 ORTHO05D002140 5.0e-10 69.3 86 48.8
CARHR127980 Cardamine hirsuta HOM05D002091 ORTHO05D002140 6.5e-10 68.9 86 46.5
Lsat_1_v5_gn_1_121360 Lactuca sativa HOM05D002091 ORTHO05D002140 6.5e-10 68.9 87 44.8
BraA08t34511Z Brassica rapa HOM05D002091 ORTHO05D002140 8.5e-10 68.6 89 48.3
Potri.004G048100 Populus trichocarpa HOM05D002091 ORTHO05D002140 8.5e-10 68.6 92 45.7
Sp1g24670 Schrenkiella parvula HOM05D002091 ORTHO05D002140 8.5e-10 68.6 89 46.1
Phvul.006G182900 Phaseolus vulgaris HOM05D002091 ORTHO05D002140 1.1e-09 68.2 86 47.7
Actinidia16569 Actinidia chinensis HOM05D002091 ORTHO05D002140 1.5e-09 67.8 92 44.6
Carub.0001s2687 Capsella rubella HOM05D002091 ORTHO05D002140 1.5e-09 67.8 89 44.9
Cc05_g07660 Coffea canephora HOM05D002091 ORTHO05D002140 1.5e-09 67.8 94 47.9
Migut.B01464 Erythranthe guttata HOM05D002091 ORTHO05D002140 1.5e-09 67.8 91 47.3
Aqoxy1G02309 Aquilegia oxysepala HOM05D002091 ORTHO05D002140 1.9e-09 67.4 91 51.6
AT1G28395 Arabidopsis thaliana HOM05D002091 ORTHO05D002140 1.9e-09 67.4 89 44.9
arahy.Tifrunner.gnm1.ann1.G0WLQA Arachis hypogaea HOM05D002091 ORTHO05D002140 1.9e-09 67.4 92 46.7
CARHR027900 Cardamine hirsuta HOM05D002091 ORTHO05D002140 1.9e-09 67.4 89 46.1
THA.LOC104814228 Tarenaya hassleriana HOM05D002091 ORTHO05D002140 1.9e-09 67.4 89 48.3
Aqoxy4G00667 Aquilegia oxysepala HOM05D002091 ORTHO05D002140 2.5e-09 67.0 94 47.9
Potri.011G057300 Populus trichocarpa HOM05D002091 ORTHO05D002140 2.5e-09 67.0 94 47.9
QL05p042066 Quercus lobata HOM05D002091 ORTHO05D002140 2.5e-09 67.0 106 43.4
Sabra11G0039200 Salix brachista HOM05D002091 ORTHO05D002140 2.5e-09 67.0 94 45.7
TAR626G1951 Trochodendron aralioides HOM05D002091 ORTHO05D002140 2.5e-09 67.0 88 48.9
AL4G29640 Arabidopsis lyrata HOM05D002091 ORTHO05D002140 3.2e-09 66.6 88 50.0
Dinv10163 Davidia involucrata HOM05D002091 ORTHO05D002140 3.2e-09 66.6 91 47.3
BcaB03g12107 Brassica carinata HOM05D002091 ORTHO05D002140 4.2e-09 66.2 90 46.7
GSVIVG01021106001 Vitis vinifera HOM05D002091 ORTHO05D002140 4.2e-09 66.2 93 49.5
C03p75100 Brassica napus HOM05D002091 ORTHO05D002140 5.5e-09 65.9 104 42.3
Peaxi162Scf00926g00514 Petunia axillaris HOM05D002091 ORTHO05D002140 5.5e-09 65.9 140 38.6
EL10Ac9g20810 Beta vulgaris HOM05D002091 ORTHO05D002140 7.2e-09 65.5 84 50.0
Thhalv10009195m.g Eutrema salsugineum HOM05D002091 ORTHO05D002140 7.2e-09 65.5 89 44.9
Rhsim04G0070900 Rhododendron simsii HOM05D002091 ORTHO05D002140 7.2e-09 65.5 93 46.2
Sc21g0003160 Simmondsia chinensis HOM05D002091 ORTHO05D002140 7.2e-09 65.5 87 47.1
CiPaw.10G052200 Carya illinoinensis HOM05D002091 ORTHO05D002140 9.4e-09 65.1 94 50.0
HanXRQChr01g0014411 Helianthus annuus HOM05D002091 ORTHO05D002140 9.4e-09 65.1 97 46.4
A09p37650 Brassica napus HOM05D002091 ORTHO05D002140 1.2e-08 64.7 89 46.1
Ciclev10017238m.g Citrus clementina HOM05D002091 ORTHO05D002140 1.2e-08 64.7 108 41.7
HanXRQChr13g0399871 Helianthus annuus HOM05D002091 ORTHO05D002140 1.2e-08 64.7 90 46.7
Actinidia39327 Actinidia chinensis HOM05D002091 ORTHO05D002140 1.6e-08 64.3 92 45.7
BcaC01g00046 Brassica carinata HOM05D002091 ORTHO05D002140 1.6e-08 64.3 91 45.1
BolC3t19767H Brassica oleracea HOM05D002091 ORTHO05D002140 1.6e-08 64.3 91 45.1
ECA234G0158 Erigeron canadensis HOM05D002091 ORTHO05D000004 1.6e-08 64.3 115 40.0
Manes.16G031200 Manihot esculenta HOM05D002091 ORTHO05D002140 1.6e-08 64.3 93 45.2
Aqoxy4G00652 Aquilegia oxysepala HOM05D002091 ORTHO05D002140 2.1e-08 63.9 94 45.7
Carub.0004s1554 Capsella rubella HOM05D002091 ORTHO05D002140 2.1e-08 63.9 88 48.9
Thecc.02G185200 Theobroma cacao HOM05D002091 ORTHO05D002140 2.1e-08 63.9 87 47.1
vmacro12339 Vaccinium macrocarpon HOM05D002091 ORTHO05D002140 2.1e-08 63.9 92 45.7
Nitab4.5_0003219g0020 Nicotiana tabacum HOM05D002091 ORTHO05D002140 3.6e-08 63.2 119 40.3
HPP92_020292 Vanilla planifolia HOM05D002091 ORTHO05D002140 3.6e-08 63.2 92 44.6
Aqoxy4G00647 Aquilegia oxysepala HOM05D002091 ORTHO05D002140 4.7e-08 62.8 111 42.3
Cpa.g.sc27.10 Carica papaya HOM05D002091 ORTHO05D002140 4.7e-08 62.8 89 44.9
Aa31LG9G13740 Aethionema arabicum HOM05D002091 ORTHO05D002140 6.1e-08 62.4 95 42.1
Duzib052G0085 Durio zibethinus HOM05D002091 ORTHO05D002140 6.1e-08 62.4 90 45.6
Duzib132G0588 Durio zibethinus HOM05D002091 ORTHO05D002140 6.1e-08 62.4 90 45.6
Sed0011525 Sechium edule HOM05D002091 ORTHO05D002140 6.1e-08 62.4 91 42.9
GSVIVG01020598001 Vitis vinifera HOM05D002091 ORTHO05D002140 6.1e-08 62.4 90 45.6
AT2G33847 Arabidopsis thaliana HOM05D002091 ORTHO05D002140 1.0e-07 61.6 86 44.2
BraA09t39275Z Brassica rapa HOM05D002091 ORTHO05D002140 1.0e-07 61.6 89 44.9
arahy.Tifrunner.gnm1.ann1.528IQ7 Arachis hypogaea HOM05D002091 ORTHO05D002140 1.4e-07 61.2 93 45.2
Dinv06863 Davidia involucrata HOM05D002091 ORTHO05D002140 2.3e-07 60.5 93 43.0
Sed0023730 Sechium edule HOM05D002091 ORTHO05D002140 2.3e-07 60.5 92 46.7
arahy.Tifrunner.gnm1.ann1.2NH087 Arachis hypogaea HOM05D002091 ORTHO05D002140 3.0e-07 60.1 92 45.7
HanXRQChr02g0052161 Helianthus annuus HOM05D002091 ORTHO05D002140 3.0e-07 60.1 89 43.8
Os01g0754000 Oryza sativa ssp. japonica HOM05D002091 ORTHO05D002140 3.0e-07 60.1 93 39.8
CSS0015244 Camellia sinensis var. sinensis HOM05D002091 ORTHO05D002140 4.0e-07 59.7 91 46.2
COL.COLO4_18048 Corchorus olitorius HOM05D002091 ORTHO05D002140 4.0e-07 59.7 86 43.0
Eucgr.D00599 Eucalyptus grandis HOM05D002091 ORTHO05D002140 4.0e-07 59.7 64 53.1
Lalb_Chr09g0327831 Lupinus albus HOM05D002091 ORTHO05D002140 4.0e-07 59.7 117 39.3
Eucgr.K01049 Eucalyptus grandis HOM05D002091 ORTHO05D002140 5.2e-07 59.3 90 42.2
FvH4_3g02420 Fragaria vesca HOM05D002091 ORTHO05D002140 5.2e-07 59.3 116 37.9
Lalb_Chr16g0383981 Lupinus albus HOM05D002091 ORTHO05D002140 5.2e-07 59.3 117 38.5
PSO832G1794 Papaver somniferum HOM05D002091 ORTHO05D002140 5.2e-07 59.3 91 45.1
Potri.017G014500 Populus trichocarpa HOM05D002091 ORTHO05D002140 5.2e-07 59.3 123 40.7
Sabra17G0011700 Salix brachista HOM05D002091 ORTHO05D002140 5.2e-07 59.3 119 41.2
ClCG02G009690 Citrullus lanatus HOM05D002091 ORTHO05D002140 6.7e-07 58.9 91 40.7
Nn3g18204 Nelumbo nucifera HOM05D002091 ORTHO05D002140 6.7e-07 58.9 82 48.8
Sed0006600 Sechium edule HOM05D002091 ORTHO05D002140 6.7e-07 58.9 91 40.7
A05p11710 Brassica napus HOM05D002091 ORTHO05D002140 8.8e-07 58.5 87 43.7
SalBow1G2686 Salvia bowleyana HOM05D000348 ORTHO05D002140 8.8e-07 58.5 57 50.9
BraA05t20116Z Brassica rapa HOM05D002091 ORTHO05D002140 1.5e-06 57.8 87 42.5
CsaV3_2G034370 Cucumis sativus L. HOM05D002091 ORTHO05D002140 1.5e-06 57.8 91 40.7
CsaV3_2G034390 Cucumis sativus L. HOM05D002091 ORTHO05D002140 1.5e-06 57.8 91 40.7
Thhalv10017477m.g Eutrema salsugineum HOM05D002091 ORTHO05D002140 1.5e-06 57.8 112 42.9
FAN21G0795 Fragaria x ananassa HOM05D000038 ORTHO05D000143 1.5e-06 57.8 96 36.5
FAN21G3975 Fragaria x ananassa HOM05D000422 ORTHO05D011804 1.5e-06 57.8 133 33.1
HanXRQChr17g0554581 Helianthus annuus HOM05D002091 ORTHO05D002140 1.5e-06 57.8 90 43.3
arahy.Tifrunner.gnm1.ann1.252E8Q Arachis hypogaea HOM05D002091 ORTHO05D002140 2.6e-06 57.0 122 39.3
Cc05_g07650 Coffea canephora HOM05D002091 ORTHO05D002140 2.6e-06 57.0 104 40.4
HanXRQChr01g0027921 Helianthus annuus HOM05D002091 ORTHO05D002140 3.3e-06 56.6 90 42.2
BraA07t27809Z Brassica rapa HOM05D002091 ORTHO05D002140 5.7e-06 55.8 121 34.7
Sabra07G0110400 Salix brachista HOM05D002091 ORTHO05D002140 5.7e-06 55.8 128 36.7
SalBow5G1784 Salvia bowleyana HOM05D002091 ORTHO05D015739 5.7e-06 55.8 61 47.5
CsaV3_2G034400 Cucumis sativus L. HOM05D002091 ORTHO05D002140 7.5e-06 55.5 91 39.6
FvH4_5g21460 Fragaria vesca HOM05D002091 ORTHO05D002140 7.5e-06 55.5 122 34.4
FAN08G0686 Fragaria x ananassa HOM05D002091 ORTHO05D002140 7.5e-06 55.5 118 35.6
FAN18G2905 Fragaria x ananassa HOM05D002091 ORTHO05D002140 7.5e-06 55.5 118 35.6
VMungo0540G0400 Vigna mungo HOM05D002091 ORTHO05D002140 7.5e-06 55.5 115 39.1
BcaB03g16855 Brassica carinata HOM05D002091 ORTHO05D002140 9.7e-06 55.1 105 39.0
BcaC06g36751 Brassica carinata HOM05D002091 ORTHO05D002140 9.7e-06 55.1 103 37.9
C04p15160 Brassica napus HOM05D002091 ORTHO05D002140 9.7e-06 55.1 90 46.7
BolC4t23091H Brassica oleracea HOM05D002091 ORTHO05D002140 9.7e-06 55.1 90 46.7
MELO3C032902.2 Cucumis melo HOM05D002091 ORTHO05D002140 9.7e-06 55.1 140 32.9
Sc05g0007470 Simmondsia chinensis HOM05D002091 ORTHO05D002140 9.7e-06 55.1 116 35.3
SGA_v2.0_scaffold70G23497 Striga asiatica HOM05D002091 ORTHO05D002140 9.7e-06 55.1 116 36.2


User provided reference genes

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