Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 5.5e-104 380.9 188 100.0
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 2.3e-70 269.2 189 72.5
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 3.1e-67 258.8 174 73.6
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 3.1e-67 258.8 192 69.8
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 7.0e-67 257.7 180 71.1
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 2.0e-66 256.1 180 69.4
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 4.5e-66 255.0 188 68.1
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 1.0e-65 253.8 181 69.6
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 1.7e-65 253.1 182 70.3
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 1.7e-65 253.1 182 68.1
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 1.7e-65 253.1 180 68.9
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 1.7e-65 253.1 176 72.2
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 2.3e-65 252.7 180 68.3
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 5.0e-65 251.5 180 69.4
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 5.0e-65 251.5 180 69.4
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 6.5e-65 251.1 178 71.9
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 6.5e-65 251.1 184 68.5
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 8.6e-65 250.8 185 69.7
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 8.6e-65 250.8 181 68.5
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 8.6e-65 250.8 180 70.6
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 1.5e-64 250.0 187 65.2
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 1.5e-64 250.0 183 68.3
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 1.5e-64 250.0 180 68.9
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 2.5e-64 249.2 180 67.8
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 3.2e-64 248.8 182 68.7
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 4.2e-64 248.4 180 68.9
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 5.5e-64 248.1 185 67.0
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 5.5e-64 248.1 176 70.5
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 7.2e-64 247.7 178 69.1
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 9.5e-64 247.3 180 68.9
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 9.5e-64 247.3 180 68.9
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 9.5e-64 247.3 180 69.4
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.6e-63 246.5 185 67.6
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 1.6e-63 246.5 183 66.7
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 1.6e-63 246.5 176 69.9
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 2.8e-63 245.7 182 65.9
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 2.8e-63 245.7 183 67.8
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 1.0e-62 243.8 172 68.6
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.4e-62 243.4 183 67.8
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 1.4e-62 243.4 183 68.3
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 1.8e-62 243.0 188 67.0
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 1.8e-62 243.0 183 66.1
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 3.0e-62 242.3 185 67.6
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 4.0e-62 241.9 180 66.7
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 4.0e-62 241.9 180 67.2
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 4.0e-62 241.9 180 67.2
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 5.2e-62 241.5 181 65.2
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 5.2e-62 241.5 181 66.9
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 5.2e-62 241.5 189 65.1
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 5.2e-62 241.5 180 68.9
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 6.8e-62 241.1 179 67.0
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 6.8e-62 241.1 179 68.2
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 6.8e-62 241.1 188 66.0
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 8.8e-62 240.7 187 63.6
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 8.8e-62 240.7 180 65.6
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 8.8e-62 240.7 186 66.1
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 1.2e-61 240.4 185 64.3
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 1.2e-61 240.4 182 64.8
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 1.2e-61 240.4 183 67.2
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.5e-61 240.0 176 67.6
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 1.5e-61 240.0 179 67.6
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.5e-61 240.0 180 68.9
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 2.0e-61 239.6 191 64.4
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 2.6e-61 239.2 172 68.0
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 2.6e-61 239.2 177 66.1
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 2.6e-61 239.2 177 67.2
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 3.4e-61 238.8 184 65.2
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 3.4e-61 238.8 152 73.7
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 3.4e-61 238.8 182 64.8
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 4.4e-61 238.4 180 65.0
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 4.4e-61 238.4 180 67.8
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 4.4e-61 238.4 189 64.0
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 5.7e-61 238.0 176 67.6
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 7.5e-61 237.7 179 65.9
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 1.3e-60 236.9 180 65.0
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 1.3e-60 236.9 179 66.5
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.7e-60 236.5 184 65.2
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 1.7e-60 236.5 191 63.9
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 2.2e-60 236.1 180 66.7
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 2.2e-60 236.1 187 62.6
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 2.8e-60 235.7 177 65.0
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 2.8e-60 235.7 177 65.0
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 2.8e-60 235.7 177 65.0
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 2.8e-60 235.7 182 63.2
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 2.8e-60 235.7 180 65.0
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 3.7e-60 235.3 177 65.5
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 3.7e-60 235.3 182 64.3
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 3.7e-60 235.3 182 64.3
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 3.7e-60 235.3 183 65.0
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 4.9e-60 235.0 174 69.5
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 4.9e-60 235.0 174 70.1
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 1.1e-59 233.8 177 64.4
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 2.4e-59 232.6 182 63.2
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 3.1e-59 232.3 184 63.0
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 3.1e-59 232.3 182 63.7
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 7.0e-59 231.1 182 63.7
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 9.2e-59 230.7 176 63.6
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.2e-58 230.3 184 63.0
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 7.8e-58 227.6 150 71.3
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.5e-56 223.4 178 61.8
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 2.6e-53 212.6 167 64.7
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 7.5e-53 211.1 170 61.2
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 1.6e-50 203.4 173 59.0
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 2.7e-50 202.6 180 60.0
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 2.7e-50 202.6 123 75.6
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 1.3e-49 200.3 149 65.1
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 8.6e-49 197.6 178 55.1
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 8.9e-46 187.6 145 64.1
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 4.4e-45 185.3 180 56.7
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 5.8e-45 184.9 181 54.1
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 1.7e-44 183.3 144 63.2
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 1.7e-44 183.3 177 55.4
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 1.3e-41 173.7 121 70.2
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 1.3e-41 173.7 144 58.3
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.3e-41 172.9 121 68.6
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 5.0e-41 171.8 184 51.1
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.1e-40 170.6 120 67.5
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 1.1e-40 170.6 148 56.8
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 3.1e-38 162.5 118 68.6
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 3.9e-33 145.6 93 75.3
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 2.5e-32 142.9 151 49.0
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 3.3e-32 142.5 129 50.4
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 8.9e-30 134.4 139 51.1
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 9.9e-29 131.0 179 44.7
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 7.1e-27 124.8 83 71.1
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 1.2e-26 124.0 180 43.3
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 1.2e-26 124.0 180 43.3
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 1.5e-24 117.1 151 42.4
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 3.3e-24 115.9 164 45.7
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 3.8e-20 102.4 76 67.1
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 4.6e-18 95.5 55 80.0
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 5.1e-17 92.0 151 36.4
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 5.1e-17 92.0 151 36.4
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 1.9e-16 90.1 102 43.1
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 5.3e-14 82.0 59 66.1
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 2.7e-10 69.7 55 60.0


User provided reference genes

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