Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 5.0e-46 187.6 105 100.0
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 6.5e-30 134.0 105 70.5
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 2.1e-28 129.0 105 68.6
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 6.1e-28 127.5 105 64.8
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 1.8e-27 125.9 105 66.7
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.3e-27 125.6 104 67.3
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 4.0e-27 124.8 104 67.3
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 6.7e-27 124.0 105 64.8
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 1.5e-26 122.9 105 66.7
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 2.0e-26 122.5 105 65.7
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 9.7e-26 120.2 105 63.8
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 9.7e-26 120.2 105 64.8
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 9.7e-26 120.2 105 62.9
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 1.7e-25 119.4 104 63.5
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 1.7e-25 119.4 105 64.8
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 2.2e-25 119.0 105 62.9
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 2.8e-25 118.6 105 65.7
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 3.7e-25 118.2 105 64.8
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 3.7e-25 118.2 105 62.9
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 4.8e-25 117.9 105 62.9
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 6.3e-25 117.5 105 62.9
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 6.3e-25 117.5 105 61.9
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 6.3e-25 117.5 105 61.9
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 6.3e-25 117.5 105 63.8
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 8.2e-25 117.1 105 62.9
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 8.2e-25 117.1 105 61.9
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.1e-24 116.7 105 61.0
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 1.8e-24 115.9 105 63.8
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 1.8e-24 115.9 105 63.8
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 2.4e-24 115.5 105 62.9
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 2.4e-24 115.5 105 61.9
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.1e-24 115.2 105 61.0
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 3.1e-24 115.2 105 62.9
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 3.1e-24 115.2 105 62.9
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 4.1e-24 114.8 105 60.0
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 5.3e-24 114.4 105 60.0
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 1.2e-23 113.2 105 61.0
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 1.2e-23 113.2 105 61.0
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.2e-23 113.2 105 61.9
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 1.2e-23 113.2 105 64.8
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 1.6e-23 112.8 105 61.0
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.6e-23 112.8 105 61.0
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.6e-23 112.8 105 61.0
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 2.0e-23 112.5 105 62.9
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 4.5e-23 111.3 105 61.0
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 1.3e-22 109.8 106 63.2
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 2.2e-22 109.0 105 58.1
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.8e-22 108.2 98 61.2
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 3.8e-22 108.2 106 59.4
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 5.0e-22 107.8 104 59.6
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 8.5e-22 107.1 97 60.8
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.9e-21 105.9 105 57.1
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 3.2e-21 105.1 105 60.0
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 4.2e-21 104.8 121 54.5
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 5.5e-21 104.4 87 67.8
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 5.5e-21 104.4 104 55.8
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 1.6e-20 102.8 103 55.3
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.6e-20 102.8 105 56.2
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.6e-20 102.8 105 59.0
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.6e-20 102.8 105 57.1
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 2.1e-20 102.4 90 61.1
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 2.7e-20 102.1 85 65.9
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 2.7e-20 102.1 105 57.1
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 3.6e-20 101.7 106 59.4
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 3.6e-20 101.7 102 58.8
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 4.7e-20 101.3 104 57.7
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 4.7e-20 101.3 105 56.2
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.7e-20 101.3 105 58.1
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 4.7e-20 101.3 106 55.7
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 4.7e-20 101.3 104 55.8
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 6.1e-20 100.9 105 56.2
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 6.1e-20 100.9 104 58.7
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 6.1e-20 100.9 104 52.9
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 6.1e-20 100.9 87 65.5
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.4e-19 99.8 104 52.9
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.4e-19 99.8 104 52.9
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 3.0e-19 98.6 105 56.2
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 3.0e-19 98.6 102 52.9
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 3.0e-19 98.6 107 54.2
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 6.8e-19 97.4 106 54.7
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 8.8e-19 97.1 106 54.7
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 8.8e-19 97.1 104 51.9
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 2.0e-18 95.9 105 54.3
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 2.0e-18 95.9 104 52.9
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 2.6e-18 95.5 106 53.8
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 3.4e-18 95.1 106 53.8
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 4.4e-18 94.7 104 55.8
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 5.7e-18 94.4 104 51.0
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 7.5e-18 94.0 106 52.8
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 7.5e-18 94.0 104 52.9
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 9.8e-18 93.6 105 52.4
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 9.8e-18 93.6 104 54.8
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.3e-17 93.2 106 51.9
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 1.3e-17 93.2 104 54.8
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.3e-17 93.2 105 54.3
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.3e-17 93.2 104 51.0
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.3e-17 93.2 104 51.0
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.3e-17 93.2 104 51.0
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 1.7e-17 92.8 104 54.8
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 1.7e-17 92.8 100 54.0
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 2.2e-17 92.4 106 52.8
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 2.2e-17 92.4 106 52.8
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 2.2e-17 92.4 106 53.8
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 2.8e-17 92.0 77 67.5
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 3.7e-17 91.7 106 51.9
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 3.7e-17 91.7 104 54.8
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 4.8e-17 91.3 89 60.7
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 6.3e-17 90.9 107 53.3
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 6.3e-17 90.9 105 51.4
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 6.3e-17 90.9 107 53.3
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 6.3e-17 90.9 106 50.9
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 6.3e-17 90.9 91 58.2
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 8.3e-17 90.5 89 60.7
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.4e-16 89.7 103 53.4
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 1.8e-16 89.4 96 57.3
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 2.4e-16 89.0 107 52.3
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 2.4e-16 89.0 107 52.3
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 2.4e-16 89.0 104 53.8
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 2.4e-16 89.0 105 49.5
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 3.1e-16 88.6 102 53.9
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.1e-16 88.6 89 58.4
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.1e-16 88.6 89 58.4
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 7.0e-16 87.4 87 56.3
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 9.1e-16 87.0 124 49.2
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 1.2e-15 86.7 93 55.9
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 1.6e-15 86.3 107 50.5
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 2.0e-15 85.9 106 50.0
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.5e-15 85.1 105 52.4
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 3.5e-15 85.1 92 56.5
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 3.5e-15 85.1 104 44.2
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 5.9e-15 84.3 88 56.8
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 5.9e-15 84.3 80 60.0
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 5.9e-15 84.3 104 48.1
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 5.9e-15 84.3 105 45.7
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 7.7e-15 84.0 103 46.6
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 7.7e-15 84.0 104 49.0
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 1.7e-14 82.8 92 50.0
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 2.9e-14 82.0 104 47.1
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 5.0e-14 81.3 104 48.1
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 5.0e-14 81.3 113 46.9
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 6.5e-14 80.9 103 51.5
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 6.5e-14 80.9 105 51.4
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 1.5e-13 79.7 104 47.1
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 1.9e-13 79.3 107 48.6
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 3.2e-13 78.6 71 64.8
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 3.2e-13 78.6 105 47.6
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 4.2e-13 78.2 103 48.5
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 9.5e-13 77.0 73 64.4
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 9.5e-13 77.0 105 43.8
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 2.1e-12 75.9 104 44.2
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 2.1e-12 75.9 105 42.9
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 6.1e-12 74.3 91 48.4
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 8.0e-12 73.9 79 50.6
TPR.G4509 Trifolium pratense HOM05D003660 ORTHO05D003415 2.3e-11 72.4 67 59.7
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 6.8e-11 70.9 124 43.5
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 6.8e-11 70.9 124 43.5
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 8.8e-11 70.5 106 46.2
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.5e-10 69.7 81 45.7
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 2.6e-10 68.9 99 43.4
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 4.4e-10 68.2 84 51.2
unitig_8.g2976 Utricularia gibba HOM05D003660 ORTHO05D003415 9.8e-10 67.0 109 45.9
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 1.3e-09 66.6 100 41.0
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 4.9e-09 64.7 81 53.1
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 4.9e-09 64.7 74 50.0
SGA_v2.0_scaffold177G39452 Striga asiatica HOM05D003660 ORTHO05D003415 4.9e-09 64.7 104 41.3
DCAR_020727 Daucus carota HOM05D003660 ORTHO05D003415 6.3e-09 64.3 131 34.4
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 6.3e-09 64.3 79 50.6
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 8.3e-09 63.9 97 41.2
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 2.4e-08 62.4 82 45.1
GSVIVG01036067001 Vitis vinifera HOM05D003660 ORTHO05D003415 2.4e-08 62.4 105 40.0
TPR.G23220 Trifolium pratense HOM05D003660 ORTHO05D003415 3.1e-08 62.0 64 62.5
Haze_23336 Corylus avellana HOM05D003660 ORTHO05D003415 4.1e-08 61.6 55 60.0
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 5.4e-08 61.2 82 42.7
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 7.0e-08 60.8 81 44.4
Sabra04G0135400 Salix brachista HOM05D003660 ORTHO05D003415 1.6e-07 59.7 57 56.1
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 2.0e-07 59.3 83 42.2
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 2.0e-07 59.3 82 41.5
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 2.0e-07 59.3 82 43.9
Ca_19453_v3 Cicer arietinum L. HOM05D003660 ORTHO05D003415 2.0e-07 59.3 50 64.0
TPR.G36105 Trifolium pratense HOM05D003660 ORTHO05D003415 1.0e-06 57.0 49 63.3
TPR.G26429 Trifolium pratense HOM05D003660 ORTHO05D003415 1.3e-06 56.6 49 61.2
BolC3t13700H Brassica oleracea HOM05D003660 ORTHO05D003415 1.7e-06 56.2 130 36.2


User provided reference genes

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