Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 0.0e+00 1180.2 577 100.0
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 1.8e-238 829.3 567 69.7
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 2.6e-237 825.5 569 69.1
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 9.8e-229 797.0 569 67.8
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 9.5e-224 780.4 563 65.9
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 2.1e-223 779.2 566 65.2
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 6.2e-223 777.7 563 65.7
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 6.8e-222 774.2 566 64.5
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 2.4e-219 765.8 561 64.9
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 3.9e-217 758.4 563 64.1
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 2.4e-214 749.2 560 65.4
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 1.7e-212 743.0 560 64.6
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 2.2e-212 742.7 563 63.4
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 4.9e-212 741.5 563 62.7
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 4.9e-212 741.5 559 63.3
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 8.4e-212 740.7 560 64.5
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 8.4e-212 740.7 563 63.4
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 1.1e-211 740.3 573 63.0
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 2.4e-211 739.2 564 63.5
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 3.2e-211 738.8 563 63.2
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 7.1e-211 737.6 561 63.5
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 9.2e-211 737.3 561 63.3
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.6e-210 736.5 571 63.2
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 2.1e-210 736.1 563 63.2
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 6.0e-210 734.6 563 62.9
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 6.0e-210 734.6 565 62.3
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 1.3e-209 733.4 564 62.9
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 1.7e-209 733.0 564 62.9
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 3.9e-209 731.9 554 63.5
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 6.6e-209 731.1 559 63.0
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 6.6e-209 731.1 565 63.4
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 1.9e-208 729.6 563 61.8
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 4.3e-208 728.4 555 63.1
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 5.6e-208 728.0 573 62.5
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 7.3e-208 727.6 560 63.2
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 1.6e-207 726.5 562 63.5
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.1e-207 726.1 576 61.8
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 2.8e-207 725.7 560 64.1
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 3.6e-207 725.3 563 61.5
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 4.7e-207 724.9 565 61.8
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 1.1e-206 723.8 561 62.9
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 1.4e-206 723.4 602 59.3
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 1.4e-206 723.4 569 63.3
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 2.4e-206 722.6 560 62.9
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 4.0e-206 721.8 554 63.2
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 9.9e-205 717.2 557 62.8
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 1.3e-204 716.8 563 61.5
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 1.7e-204 716.5 542 63.3
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 2.2e-204 716.1 565 60.5
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 2.2e-204 716.1 557 60.9
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 2.9e-204 715.7 558 61.1
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 2.9e-204 715.7 529 64.8
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 1.9e-203 713.0 559 61.5
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 2.4e-203 712.6 560 61.1
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 7.1e-203 711.1 564 60.3
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 1.2e-202 710.3 565 60.4
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 1.2e-202 710.3 555 62.7
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 3.5e-202 708.8 567 60.1
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.0e-201 707.2 557 60.7
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.0e-201 707.2 557 60.7
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 2.3e-201 706.1 555 63.1
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 5.1e-201 704.9 530 64.0
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 1.9e-200 703.0 557 61.0
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 2.5e-200 702.6 557 61.0
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 3.3e-200 702.2 553 60.4
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 1.3e-199 700.3 565 59.8
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 1.3e-199 700.3 557 60.7
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 2.1e-199 699.5 561 59.7
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 2.6e-197 692.6 565 61.6
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 9.9e-197 690.6 555 61.4
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.3e-196 690.3 563 60.0
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 3.8e-196 688.7 566 61.7
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 8.4e-196 687.6 581 58.5
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 1.1e-195 687.2 582 58.4
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.4e-195 686.8 560 62.1
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 7.9e-194 681.0 512 62.9
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 4.8e-191 671.8 596 59.1
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 1.1e-190 670.6 560 58.0
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 2.9e-188 662.5 563 59.7
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 7.1e-187 657.9 740 47.8
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 1.6e-186 656.8 559 56.9
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 6.0e-186 654.8 551 61.2
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 1.1e-182 644.0 563 56.5
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 4.5e-181 638.6 571 55.9
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 2.2e-180 636.3 543 58.7
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 1.4e-179 633.6 481 64.0
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 1.9e-179 633.3 572 53.3
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 9.3e-179 630.9 560 57.7
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 3.9e-177 625.5 611 53.4
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 7.6e-173 611.3 476 60.9
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 1.7e-172 610.1 542 57.4
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.1e-171 607.4 566 55.5
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 4.1e-166 589.0 438 63.5
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 5.3e-166 588.6 613 51.7
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 2.8e-159 566.2 432 62.3
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 3.8e-156 555.8 534 53.4
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 7.2e-155 551.6 461 57.9
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.1e-152 544.3 379 68.1
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 1.0e-148 531.2 568 47.9
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 7.2e-147 525.0 570 47.5
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 2.2e-140 503.4 395 62.8
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.2e-140 503.4 406 60.6
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 9.4e-139 498.0 545 48.8
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 5.9e-133 478.8 355 65.1
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 7.2e-131 471.9 560 46.4
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 6.1e-130 468.8 560 45.2
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.4e-129 467.6 381 61.4
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 2.4e-126 456.8 324 66.4
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 3.1e-126 456.4 581 42.9
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 8.6e-116 421.8 383 54.8
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.5e-115 421.0 254 74.4
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 4.3e-115 419.5 485 45.4
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 3.9e-108 396.4 236 75.8
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 5.1e-108 396.0 228 76.3
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 5.1e-108 396.0 228 76.3
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 1.2e-104 384.8 230 73.0
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 8.4e-95 352.1 308 57.5
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.9e-78 297.7 212 65.1
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.4e-78 297.4 212 65.6
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 7.4e-75 285.8 569 33.6
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 4.8e-74 283.1 166 73.5
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 4.9e-71 273.1 585 34.0
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 1.1e-67 261.9 599 32.9
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 1.0e-63 248.8 169 67.5
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 4.9e-63 246.5 604 29.1
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 4.9e-63 246.5 527 32.4
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 3.2e-54 217.2 277 44.8
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 1.5e-51 208.4 196 52.0
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 4.3e-51 206.8 406 36.7
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 1.2e-45 188.7 289 37.7
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 2.2e-42 177.9 181 52.5
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 2.8e-34 151.0 377 29.7
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 9.1e-33 146.0 85 68.2
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 4.4e-27 127.1 99 61.6
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.3e-26 125.6 103 61.2
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 2.8e-26 124.4 82 69.5
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 1.6e-24 118.6 119 47.1
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 7.7e-24 116.3 121 52.1
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.7e-23 115.2 196 35.2
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 3.7e-18 97.4 136 41.9
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 8.3e-18 96.3 302 28.1
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.4e-12 79.0 123 39.0
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 1.7e-10 72.0 61 50.8
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 3.2e-09 67.8 98 40.8
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 4.1e-09 67.4 51 58.8
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 5.9e-08 63.5 84 42.9
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 3.3e-06 57.8 145 32.4


User provided reference genes

Program Settings