Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 3.1e-179 631.7 325 100.0
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.0e-94 350.9 319 58.0
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 1.7e-92 343.6 321 57.3
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.7e-89 333.6 319 57.1
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 1.6e-87 327.0 321 55.5
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 2.3e-86 323.2 315 54.6
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 1.1e-83 314.3 326 54.3
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 9.9e-77 291.2 324 51.2
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.3e-73 280.8 324 49.7
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 1.9e-72 276.9 326 51.8
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 2.8e-71 273.1 326 47.5
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 4.7e-71 272.3 323 46.4
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 4.7e-71 272.3 322 49.1
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.7e-71 272.3 303 49.8
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 1.1e-70 271.2 320 47.2
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.4e-70 270.0 327 49.2
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 3.1e-70 269.6 314 49.4
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 4.0e-70 269.2 322 45.7
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 2.0e-69 266.9 329 46.5
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.6e-69 266.5 323 47.1
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 7.6e-69 265.0 320 46.9
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.7e-68 263.8 327 43.7
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 2.9e-68 263.1 331 47.1
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.8e-68 262.7 337 45.4
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.1e-67 261.2 326 47.9
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.4e-67 260.8 331 47.1
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.9e-67 260.4 322 44.7
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 2.4e-67 260.0 327 46.5
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 2.4e-67 260.0 328 46.3
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 7.1e-67 258.5 327 43.4
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 7.1e-67 258.5 285 48.8
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 1.2e-66 257.7 325 45.5
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.6e-66 257.3 322 46.3
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 3.5e-66 256.1 323 44.9
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.6e-66 255.8 327 48.0
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 6.0e-66 255.4 322 46.0
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 3.0e-65 253.1 326 45.7
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.9e-65 252.7 327 46.8
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 5.1e-65 252.3 324 46.0
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 1.5e-64 250.8 326 45.7
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.9e-64 250.4 329 46.2
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.9e-64 250.4 315 46.0
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 1.9e-64 250.4 327 46.2
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 2.5e-64 250.0 326 44.8
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 3.3e-64 249.6 326 45.1
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 4.3e-64 249.2 328 44.8
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 5.6e-64 248.8 323 43.7
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 9.6e-64 248.1 321 43.9
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.3e-63 247.7 323 44.9
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 8.1e-63 245.0 327 43.7
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 8.1e-63 245.0 323 44.3
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.1e-62 244.6 328 43.6
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.1e-62 244.6 329 42.2
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.4e-62 244.2 324 44.8
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 2.4e-62 243.4 321 44.9
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.4e-62 243.4 329 42.2
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.4e-62 243.4 329 41.9
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 2.4e-62 243.4 326 45.7
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 3.1e-62 243.0 324 43.8
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 3.1e-62 243.0 324 43.8
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 3.1e-62 243.0 324 43.8
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 4.0e-62 242.7 318 45.3
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 5.3e-62 242.3 328 44.2
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 5.3e-62 242.3 326 45.7
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 5.3e-62 242.3 327 45.3
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 5.3e-62 242.3 325 45.8
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 6.9e-62 241.9 320 44.4
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 9.0e-62 241.5 328 43.3
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.5e-61 240.7 320 44.7
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.5e-61 240.7 324 43.8
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 2.0e-61 240.4 328 41.8
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 2.6e-61 240.0 324 43.2
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.4e-61 239.6 329 43.8
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 4.5e-61 239.2 324 43.5
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 4.5e-61 239.2 324 43.5
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 4.5e-61 239.2 326 45.1
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 5.8e-61 238.8 324 42.6
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 5.8e-61 238.8 324 43.2
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 5.8e-61 238.8 326 44.8
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 7.6e-61 238.4 328 43.3
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 7.6e-61 238.4 329 43.2
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 7.6e-61 238.4 329 43.2
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 9.9e-61 238.0 324 42.9
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 2.2e-60 236.9 329 46.2
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 2.9e-60 236.5 325 43.7
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 2.9e-60 236.5 325 43.7
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 2.9e-60 236.5 325 43.7
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.9e-60 236.5 324 43.5
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 3.8e-60 236.1 286 46.9
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 4.9e-60 235.7 329 44.1
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 4.9e-60 235.7 276 48.2
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.1e-59 234.6 317 44.2
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.4e-59 234.2 331 43.5
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.4e-59 234.2 265 50.6
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 1.9e-59 233.8 319 42.9
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 2.4e-59 233.4 328 43.9
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.4e-59 233.4 265 50.6
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 7.1e-59 231.9 300 45.7
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 1.6e-58 230.7 329 45.6
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 2.1e-58 230.3 312 45.2
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.7e-58 229.9 337 41.2
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 2.7e-58 229.9 325 41.5
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 3.5e-58 229.6 321 42.4
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 7.9e-58 228.4 321 43.3
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 2.3e-57 226.9 326 43.3
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 2.3e-57 226.9 349 41.5
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 3.0e-57 226.5 327 43.7
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 8.7e-57 224.9 322 42.2
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 1.9e-56 223.8 321 44.5
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 4.3e-56 222.6 330 44.8
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 6.2e-55 218.8 321 42.7
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 8.1e-55 218.4 298 44.0
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.4e-54 217.6 298 43.6
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 4.0e-54 216.1 267 43.8
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 5.3e-54 215.7 288 43.8
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 6.9e-54 215.3 326 42.3
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 6.9e-54 215.3 295 44.4
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 9.0e-54 214.9 329 43.8
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 2.6e-53 213.4 328 40.2
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 7.6e-53 211.8 323 40.6
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 9.9e-53 211.5 325 40.6
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 4.9e-52 209.1 317 40.4
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 6.4e-52 208.8 425 34.8
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.9e-51 207.2 325 39.7
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 5.5e-51 205.7 321 39.9
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 4.6e-50 202.6 323 39.0
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 5.1e-49 199.1 328 39.9
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.9e-48 197.2 286 39.9
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 4.3e-48 196.1 393 36.4
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.6e-48 195.7 265 44.2
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.6e-47 194.1 322 37.6
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 3.7e-47 193.0 289 41.5
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.8e-46 190.7 323 36.8
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 2.0e-45 187.2 214 49.5
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 5.7e-40 169.1 323 36.5
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 6.3e-39 165.6 251 37.1
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 8.5e-36 155.2 224 42.9
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 1.1e-32 144.8 231 39.0
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 2.8e-31 140.2 314 30.6
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.4e-29 133.3 331 29.0
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.9e-28 130.2 161 43.5
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.3e-23 114.8 308 29.9
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 8.2e-23 112.1 333 29.4
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 6.5e-20 102.4 131 40.5
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.9e-19 100.9 131 39.7
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 2.5e-19 100.5 194 36.1
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 2.0e-16 90.9 165 32.1
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 1.3e-15 88.2 170 34.1
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.1e-14 83.6 101 45.5
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 9.1e-14 82.0 120 39.2
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.6e-13 80.5 90 44.4
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 2.7e-10 70.5 83 43.4
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.7e-10 69.7 86 44.2
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.7e-10 69.7 86 44.2
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 8.0e-10 68.9 68 47.1
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 8.0e-10 68.9 68 47.1
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.0e-09 68.6 85 43.5
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 9.7e-08 62.0 137 32.8
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.7e-08 62.0 100 37.0
Glyma.03G121400 Glycine max HOM05D004300 ORTHO05D005171 4.1e-06 56.6 38 68.4


User provided reference genes

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