Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 0.0e+00 1274.6 620 100.0
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 1.3e-258 896.3 615 68.9
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 6.4e-250 867.5 615 66.0
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 6.6e-247 857.4 620 66.0
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 2.3e-244 849.0 612 64.9
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 2.6e-235 818.9 616 63.0
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 4.4e-235 818.1 616 62.7
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 1.7e-234 816.2 613 62.5
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 4.9e-234 814.7 616 62.7
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 1.1e-233 813.5 615 62.3
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 3.0e-231 805.4 616 62.2
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 3.0e-231 805.4 616 61.4
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 5.1e-231 804.7 614 61.7
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 6.6e-231 804.3 615 62.6
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.5e-230 803.1 632 60.0
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 4.3e-230 801.6 614 61.4
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 9.6e-230 800.4 616 61.9
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 2.4e-228 795.8 615 61.0
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 2.0e-227 792.7 613 60.7
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 1.7e-226 789.6 651 58.5
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 2.9e-226 788.9 616 61.2
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 4.9e-226 788.1 616 61.0
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.1e-225 786.9 598 61.4
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 2.4e-225 785.8 622 59.5
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 3.2e-225 785.4 617 60.3
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 4.2e-225 785.0 628 61.1
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 9.3e-225 783.9 617 60.6
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 9.3e-225 783.9 616 60.2
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 1.6e-224 783.1 615 61.1
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 2.7e-224 782.3 615 60.7
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 3.0e-223 778.9 616 60.4
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 3.9e-223 778.5 617 60.0
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 5.1e-223 778.1 619 59.5
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 8.7e-223 777.3 625 59.0
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 1.5e-222 776.5 616 59.7
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 2.5e-222 775.8 618 61.7
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 4.3e-222 775.0 624 59.0
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 7.3e-222 774.2 652 57.1
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 2.1e-221 772.7 621 59.3
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 8.1e-221 770.8 615 60.3
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 1.5e-219 766.5 615 58.9
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 2.6e-219 765.8 615 59.3
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 1.3e-218 763.5 663 56.4
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 2.2e-218 762.7 617 59.5
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 2.2e-218 762.7 615 59.2
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 8.4e-218 760.8 645 57.1
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 1.1e-217 760.4 615 59.0
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 5.4e-217 758.1 614 59.3
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 1.2e-216 756.9 623 59.1
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 1.3e-215 753.4 615 58.9
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 5.1e-215 751.5 615 58.7
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 1.1e-214 750.4 610 58.7
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 1.5e-214 750.0 584 61.8
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 2.8e-213 745.7 646 57.0
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 2.8e-213 745.7 617 58.7
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 3.6e-213 745.3 697 53.4
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 6.2e-213 744.6 615 57.9
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 6.2e-213 744.6 617 58.8
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 6.2e-213 744.6 610 58.4
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 8.1e-213 744.2 621 57.6
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 3.1e-212 742.3 617 57.9
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 5.3e-212 741.5 617 57.9
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 4.5e-211 738.4 657 54.3
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 5.8e-211 738.0 610 58.2
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 4.9e-210 734.9 614 57.5
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 1.2e-208 730.3 617 57.4
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 2.7e-208 729.2 617 57.7
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 6.0e-208 728.0 615 57.7
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 1.3e-207 726.9 619 56.4
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 1.3e-207 726.9 619 56.4
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 6.7e-207 724.5 614 56.4
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 6.7e-207 724.5 617 56.1
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 1.1e-206 723.8 617 57.7
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 9.6e-206 720.7 614 56.8
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 4.0e-204 715.3 618 57.3
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 1.2e-203 713.8 567 60.3
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 2.0e-203 713.0 617 55.9
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 7.6e-203 711.1 601 57.9
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 4.9e-202 708.4 660 53.9
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 2.7e-200 702.6 616 54.7
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 1.8e-199 699.9 668 53.3
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 2.5e-198 696.0 620 54.5
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 8.2e-197 691.0 611 54.2
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 5.8e-195 684.9 616 55.5
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 3.5e-192 675.6 616 55.4
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 1.3e-186 657.1 613 54.3
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 1.5e-174 617.1 529 56.9
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 3.3e-174 615.9 550 56.0
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.3e-165 587.4 530 54.5
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 5.2e-159 565.5 522 56.5
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 2.0e-155 553.5 622 46.1
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 7.7e-147 525.0 637 43.6
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 7.3e-145 518.5 650 42.3
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 4.7e-144 515.8 585 44.4
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 5.7e-142 508.8 636 42.3
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 1.5e-134 484.2 415 56.9
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 1.2e-123 448.0 412 54.9
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.7e-122 444.1 400 55.5
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 3.9e-122 443.0 446 47.8
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 6.2e-120 435.6 314 61.8
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 6.8e-119 432.2 467 47.1
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 8.4e-117 425.2 374 56.1
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 1.9e-113 414.1 420 51.0
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 1.4e-103 381.3 339 57.5
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 1.4e-87 328.2 191 74.9
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 6.5e-77 292.7 306 51.0
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 7.4e-73 279.3 262 52.3
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 5.3e-71 273.1 267 50.9
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 1.1e-68 265.4 229 55.5
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 1.6e-67 261.5 146 77.4
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 5.9e-62 243.0 149 72.5
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 2.3e-58 231.1 264 44.7
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 1.6e-54 218.4 123 73.2
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 5.5e-52 209.9 181 52.5
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 8.2e-48 196.1 147 57.8
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 3.8e-37 160.6 196 44.4
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.1e-36 159.1 95 71.6
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 1.0e-26 125.9 215 33.5
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 3.2e-23 114.4 491 25.5
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 3.5e-22 110.9 54 85.2
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 3.1e-10 71.2 82 40.2
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 4.4e-09 67.4 78 46.2
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 1.7e-08 65.5 52 53.8
Medtr5g096700 Medicago truncatula HOM05D002322 ORTHO05D002536 1.7e-08 65.5 155 31.0
Os10g0434999 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.4e-07 62.4 153 29.4
TPR.G1305 Trifolium pratense HOM05D002322 ORTHO05D002536 1.4e-07 62.4 155 31.6
Zm00001eb418740 Zea mays HOM05D000563 ORTHO05D442000 1.9e-07 62.0 150 27.3
CDE10G1194 Ceratophyllum demersum HOM05D002322 ORTHO05D002536 2.4e-07 61.6 125 28.8
Os10g0435900 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.4e-07 61.6 122 30.3
Aqoxy6G00231 Aquilegia oxysepala HOM05D002322 ORTHO05D002536 4.1e-07 60.8 167 28.1
Aqoxy117s002 Aquilegia oxysepala HOM05D003949 ORTHO05D004504 5.4e-07 60.5 132 28.8
Aqoxy3G01750 Aquilegia oxysepala HOM05D003949 ORTHO05D004504 5.4e-07 60.5 132 28.8
FAN25G3761 Fragaria x ananassa HOM05D002322 ORTHO05D002536 5.4e-07 60.5 171 29.2
SEGI_30836 Sequoiadendron giganteum HOM05D002322 ORTHO05D002536 5.4e-07 60.5 191 28.3
Hma1.2p1_0321F.1_g124140 Hydrangea macrophylla HOM05D002322 ORTHO05D002536 1.6e-06 58.9 149 28.9
PGR042G2128 Punica granatum HOM05D003949 ORTHO05D004504 1.6e-06 58.9 127 32.3
Actinidia29493 Actinidia chinensis HOM05D003949 ORTHO05D004504 2.1e-06 58.5 130 30.0
Prupe.1G488000 Prunus persica HOM05D003949 ORTHO05D004504 2.1e-06 58.5 112 33.9
Migut.N03283 Erythranthe guttata HOM05D002322 ORTHO05D002536 3.5e-06 57.8 167 28.1
AT5G19330 Arabidopsis thaliana HOM05D002203 ORTHO05D002647 6.0e-06 57.0 147 27.9
MSTRG.1405 Avicennia marina HOM05D003949 ORTHO05D004504 6.0e-06 57.0 125 30.4
ECA238G3018 Erigeron canadensis HOM05D002006 ORTHO05D002128 6.0e-06 57.0 132 30.3
FAN24G2884 Fragaria x ananassa HOM05D002322 ORTHO05D002536 6.0e-06 57.0 125 31.2
Lj7C342G5 Lonicera japonica HOM05D002322 ORTHO05D002536 6.0e-06 57.0 128 30.5
RcHm_v2.0_Chr6g0295921 Rosa chinensis HOM05D002322 ORTHO05D002536 6.0e-06 57.0 128 29.7
SMO364G0812 Selaginella moellendorffii HOM05D002203 ORTHO05D002647 6.0e-06 57.0 150 27.3
SGA_v2.0_scaffold28G11965 Striga asiatica HOM05D003949 ORTHO05D004504 6.0e-06 57.0 93 33.3
AL6G30820 Arabidopsis lyrata HOM05D002203 ORTHO05D002647 7.8e-06 56.6 147 27.9
CiPaw.16G022200 Carya illinoinensis HOM05D003949 ORTHO05D004504 7.8e-06 56.6 149 30.2
Ca_06139_v3 Cicer arietinum L. HOM05D000563 ORTHO05D000536 7.8e-06 56.6 142 28.9
DCAR_003553 Daucus carota HOM05D002322 ORTHO05D002536 7.8e-06 56.6 128 28.9
DCAR_003593 Daucus carota HOM05D003949 ORTHO05D004504 7.8e-06 56.6 137 30.7
FvH4_2g27041 Fragaria vesca HOM05D002322 ORTHO05D002536 7.8e-06 56.6 125 30.4
FvH4_2g28021 Fragaria vesca HOM05D003949 ORTHO05D004504 7.8e-06 56.6 125 30.4
FAN20G1921 Fragaria x ananassa HOM05D003949 ORTHO05D004504 7.8e-06 56.6 125 30.4
FAN24G2840 Fragaria x ananassa HOM05D003949 ORTHO05D004504 7.8e-06 56.6 125 30.4


User provided reference genes

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