Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 2.9e-52 208.4 112 100.0
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.5e-35 151.0 111 69.4
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.5e-35 151.0 111 69.4
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 1.8e-33 146.0 107 70.1
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 2.3e-33 145.6 105 71.4
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 3.0e-33 145.2 111 64.9
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 3.9e-33 144.8 107 70.1
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 3.9e-33 144.8 107 70.1
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 5.1e-33 144.4 111 66.7
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 6.7e-33 144.1 107 68.2
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 6.7e-33 144.1 111 66.7
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 6.7e-33 144.1 107 69.2
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 8.8e-33 143.7 111 66.7
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 2.0e-32 142.5 111 65.8
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 2.6e-32 142.1 107 66.4
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 3.3e-32 141.7 107 68.2
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 3.3e-32 141.7 107 67.3
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 5.7e-32 141.0 111 64.9
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 9.7e-32 140.2 107 69.2
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 1.3e-31 139.8 111 63.1
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.3e-31 139.8 111 65.8
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.7e-31 139.4 107 66.4
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 2.8e-31 138.7 106 66.0
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 2.8e-31 138.7 107 65.4
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 3.7e-31 138.3 107 65.4
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 3.7e-31 138.3 101 69.3
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 4.8e-31 137.9 111 63.1
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 4.8e-31 137.9 111 64.9
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 4.8e-31 137.9 107 67.3
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 4.8e-31 137.9 108 65.7
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 6.3e-31 137.5 111 63.1
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 6.3e-31 137.5 106 66.0
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 1.1e-30 136.7 101 69.3
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 1.4e-30 136.3 111 61.3
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.4e-30 136.3 107 64.5
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.4e-30 136.3 107 64.5
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 1.4e-30 136.3 111 61.3
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 1.4e-30 136.3 108 64.8
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 1.4e-30 136.3 111 64.9
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.8e-30 136.0 106 65.1
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 1.8e-30 136.0 108 63.9
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.8e-30 136.0 111 63.1
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 1.8e-30 136.0 99 69.7
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 2.4e-30 135.6 107 63.6
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 2.4e-30 135.6 111 62.2
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 2.4e-30 135.6 105 65.7
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 3.1e-30 135.2 107 65.4
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 3.1e-30 135.2 106 64.2
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 4.1e-30 134.8 106 64.2
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 4.1e-30 134.8 107 67.3
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 4.1e-30 134.8 106 64.2
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 4.1e-30 134.8 107 64.5
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 5.3e-30 134.4 104 64.4
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 5.3e-30 134.4 108 64.8
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 5.3e-30 134.4 107 62.6
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 6.9e-30 134.0 111 61.3
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 6.9e-30 134.0 107 63.6
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 6.9e-30 134.0 107 65.4
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 9.1e-30 133.7 107 63.6
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 1.2e-29 133.3 107 65.4
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.2e-29 133.3 107 62.6
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 1.5e-29 132.9 107 62.6
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 1.5e-29 132.9 108 65.7
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.5e-29 132.9 108 64.8
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 1.5e-29 132.9 108 63.0
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 1.5e-29 132.9 108 63.0
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.5e-29 132.9 108 63.0
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.5e-29 132.9 108 63.0
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 1.5e-29 132.9 108 65.7
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 2.0e-29 132.5 106 65.1
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 2.0e-29 132.5 109 64.2
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 2.6e-29 132.1 111 61.3
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 2.6e-29 132.1 111 61.3
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 2.6e-29 132.1 111 57.7
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 3.4e-29 131.7 101 66.3
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 3.4e-29 131.7 101 66.3
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 3.4e-29 131.7 108 63.0
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 3.4e-29 131.7 107 60.7
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 3.4e-29 131.7 107 61.7
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 3.4e-29 131.7 111 57.7
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 4.5e-29 131.3 108 63.0
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 4.5e-29 131.3 105 64.8
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 4.5e-29 131.3 97 71.1
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 4.5e-29 131.3 108 63.9
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 5.9e-29 131.0 102 65.7
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 7.7e-29 130.6 107 63.6
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.0e-28 130.2 102 64.7
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 1.3e-28 129.8 108 61.1
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 1.7e-28 129.4 107 62.6
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 2.2e-28 129.0 107 59.8
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 2.9e-28 128.6 108 62.0
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 5.0e-28 127.9 111 59.5
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 5.0e-28 127.9 80 80.0
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 6.5e-28 127.5 108 62.0
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 8.5e-28 127.1 80 80.0
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 8.5e-28 127.1 101 64.4
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.1e-27 126.7 106 63.2
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.1e-27 126.7 106 63.2
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.1e-27 126.7 106 63.2
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.4e-27 126.3 105 63.8
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 1.4e-27 126.3 100 66.0
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 1.4e-27 126.3 105 61.9
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 1.9e-27 125.9 108 62.0
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 2.5e-27 125.6 106 62.3
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 2.5e-27 125.6 111 56.8
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 3.2e-27 125.2 105 62.9
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 4.2e-27 124.8 79 78.5
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 5.5e-27 124.4 106 63.2
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 9.4e-27 123.6 80 76.2
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.1e-26 122.5 107 60.7
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 3.6e-26 121.7 80 75.0
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 6.1e-26 120.9 111 56.8
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 6.1e-26 120.9 142 49.3
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 1.0e-25 120.2 106 60.4
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.4e-25 119.8 78 75.6
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 5.2e-25 117.9 77 76.6
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.1e-24 116.7 139 48.9
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.5e-24 116.3 111 55.9
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 2.0e-24 115.9 80 75.0
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 2.0e-24 115.9 80 75.0
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.7e-23 112.8 88 65.9
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.7e-23 112.8 111 54.1
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.0e-20 103.6 77 64.9
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.3e-20 103.2 92 62.0
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 1.3e-20 103.2 65 75.4
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 2.9e-20 102.1 104 56.7
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.8e-20 101.7 101 52.5
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 3.8e-20 101.7 107 52.3
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 5.0e-20 101.3 92 56.5
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 6.5e-20 100.9 70 71.4
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 3.6e-18 95.1 93 55.9
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.3e-17 92.4 85 57.6
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.0e-16 89.4 107 44.9
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 3.1e-14 82.0 80 50.0
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.5e-13 78.6 76 52.6
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 7.7e-13 77.4 69 58.0
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 7.7e-13 77.4 86 48.8
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 1.7e-12 76.3 68 57.4
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 3.8e-12 75.1 69 53.6
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.5e-11 72.4 99 44.4
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 4.2e-11 71.6 51 68.6
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 1.6e-10 69.7 102 40.2
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 2.1e-10 69.3 79 46.8
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 2.1e-10 69.3 42 78.6
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 2.7e-10 68.9 56 60.7
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 2.7e-10 68.9 43 72.1
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 3.6e-10 68.6 50 66.0
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 6.1e-10 67.8 43 69.8
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.0e-09 67.0 45 73.3
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.4e-09 66.6 44 63.6
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.4e-09 66.6 78 47.4
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 2.3e-09 65.9 43 67.4
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 3.0e-09 65.5 51 62.7
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 2.0e-08 62.8 57 54.4
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.4e-08 61.6 57 56.1
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.2e-07 59.3 59 49.2
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 9.1e-06 53.9 67 49.3


User provided reference genes

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