Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 4.8e-188 661.0 328 100.0
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 3.0e-121 439.1 294 75.5
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 6.6e-113 411.4 296 71.6
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 4.0e-110 402.1 269 74.0
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 1.2e-109 400.6 275 72.0
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 1.2e-109 400.6 303 65.7
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.3e-108 397.1 293 70.0
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 3.7e-108 395.6 278 71.9
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 6.4e-108 394.8 293 70.0
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 8.4e-108 394.4 275 69.1
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 1.4e-107 393.7 293 70.0
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 5.4e-107 391.7 268 73.1
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 7.1e-107 391.3 279 67.4
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 1.2e-106 390.6 287 67.9
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 1.6e-106 390.2 288 65.6
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.6e-106 390.2 297 66.0
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.6e-106 390.2 297 66.0
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 1.6e-106 390.2 292 64.0
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 2.1e-106 389.8 294 64.3
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 1.0e-105 387.5 296 64.5
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 1.3e-105 387.1 289 66.8
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 3.0e-105 386.0 278 68.7
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 3.0e-105 386.0 265 70.9
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 3.9e-105 385.6 292 64.4
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 5.1e-105 385.2 274 67.5
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 5.1e-105 385.2 274 67.5
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 5.1e-105 385.2 274 67.5
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 5.1e-105 385.2 301 64.8
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 8.6e-105 384.4 284 65.8
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 1.1e-104 384.0 272 68.0
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 2.5e-104 382.9 270 68.1
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.3e-104 382.5 290 65.5
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 3.3e-104 382.5 300 66.0
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 5.6e-104 381.7 270 68.1
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 7.3e-104 381.3 278 66.9
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.2e-103 380.6 288 65.3
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 1.2e-103 380.6 307 62.9
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 2.1e-103 379.8 270 67.4
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 2.8e-103 379.4 285 65.3
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 1.1e-102 377.5 276 65.9
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 1.8e-102 376.7 290 62.8
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 1.8e-102 376.7 282 64.9
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 2.4e-102 376.3 270 67.0
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 2.4e-102 376.3 298 63.1
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 3.1e-102 375.9 277 65.7
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 5.2e-102 375.2 286 66.4
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 5.2e-102 375.2 284 65.8
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 6.8e-102 374.8 280 65.4
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 8.9e-102 374.4 307 60.6
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 8.9e-102 374.4 272 66.9
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 1.2e-101 374.0 299 63.5
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.5e-101 373.6 291 62.5
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 1.5e-101 373.6 292 63.7
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 4.4e-101 372.1 323 61.0
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 5.8e-101 371.7 296 63.2
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 7.6e-101 371.3 270 67.0
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 9.9e-101 370.9 296 63.5
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 2.2e-100 369.8 306 61.1
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 2.9e-100 369.4 270 65.2
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 4.9e-100 368.6 282 66.3
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 6.4e-100 368.2 307 59.3
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 8.4e-100 367.9 275 65.1
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.4e-99 367.1 282 65.6
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 1.9e-99 366.7 274 65.7
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 1.9e-99 366.7 232 77.2
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 1.9e-99 366.7 272 64.3
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 4.2e-99 365.5 274 65.3
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 4.2e-99 365.5 295 61.7
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 4.2e-99 365.5 291 62.9
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 7.1e-99 364.8 291 62.9
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 9.3e-99 364.4 233 76.4
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 9.3e-99 364.4 312 60.6
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.1e-98 363.2 273 66.7
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 2.7e-98 362.8 319 60.2
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 4.6e-98 362.1 232 74.6
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 6.0e-98 361.7 274 65.0
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 1.3e-97 360.5 283 61.8
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 3.0e-97 359.4 279 63.8
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 5.1e-97 358.6 288 62.5
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 6.6e-97 358.2 315 56.8
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 8.7e-97 357.8 233 71.7
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 7.3e-96 354.8 235 72.8
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 6.2e-95 351.7 281 61.9
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 1.4e-94 350.5 287 61.3
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.1e-94 349.4 272 64.3
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.1e-94 349.4 272 64.3
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 3.1e-94 349.4 298 60.1
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.2e-93 347.4 273 64.1
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 3.4e-93 345.9 280 60.7
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 4.5e-93 345.5 262 63.7
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 6.4e-92 341.7 247 66.8
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 6.4e-92 341.7 300 57.3
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 5.4e-91 338.6 260 64.2
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 5.1e-89 332.0 403 47.1
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 9.6e-88 327.8 295 58.0
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 5.3e-86 322.0 289 56.4
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.7e-84 317.0 195 80.0
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.6e-82 308.9 236 64.0
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 5.1e-81 305.4 261 57.1
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 3.7e-79 299.3 193 71.5
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 1.8e-78 297.0 260 56.5
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 1.7e-76 290.4 259 57.1
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 4.1e-70 269.2 222 64.0
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 3.2e-67 259.6 206 63.6
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 1.6e-66 257.3 197 62.4
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 9.7e-64 248.1 207 63.3
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 4.8e-63 245.7 206 62.1
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 5.9e-61 238.8 219 57.5
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 4.6e-58 229.2 173 65.3
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-57 226.9 157 68.2
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 2.8e-55 219.9 170 65.9
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 4.8e-55 219.2 185 60.0
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 3.1e-54 216.5 170 64.7
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.5e-53 214.2 179 61.5
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 7.7e-53 211.8 131 80.9
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 1.3e-52 211.1 204 52.9
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 1.2e-50 204.5 227 50.2
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 7.0e-46 188.7 127 66.9
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-42 177.2 157 58.6
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-42 177.2 157 58.6
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-42 176.8 157 58.0
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 6.1e-42 175.6 203 49.8
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-41 174.9 162 56.8
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-41 173.7 168 56.5
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 6.7e-41 172.2 157 57.3
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-39 167.9 161 55.3
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 3.7e-39 166.4 108 74.1
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 6.3e-39 165.6 169 52.1
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-34 151.4 144 56.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-33 148.3 163 50.9
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 3.0e-33 146.7 103 70.9
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 7.5e-32 142.1 164 49.4
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 7.5e-32 142.1 164 49.4
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 9.8e-32 141.7 174 48.9
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-31 140.6 124 58.9
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 8.3e-31 138.7 100 69.0
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-30 138.3 95 72.6
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-30 137.1 124 58.9
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 3.1e-30 136.7 108 64.8
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 4.1e-30 136.3 88 68.2
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 5.9e-29 132.5 228 37.7
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.4e-24 116.3 140 47.1
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.3e-23 114.8 75 69.3
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-22 111.3 114 52.6
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 4.3e-19 99.8 66 74.2
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 6.1e-18 95.9 134 39.6
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.8e-17 94.4 167 41.3
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-15 87.0 106 47.2
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-14 84.7 120 45.8
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 2.4e-14 84.0 59 61.0
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.2e-13 81.6 58 70.7
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 8.3e-07 58.9 112 32.1


User provided reference genes

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