Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 2.7e-100 368.6 181 100.0
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 1.6e-52 209.9 181 64.6
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 4.5e-47 191.8 181 59.7
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 6.6e-46 188.0 181 55.8
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 3.3e-45 185.7 181 54.1
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 3.3e-45 185.7 181 56.4
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 5.5e-45 184.9 179 56.4
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 7.2e-45 184.5 181 56.9
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 9.5e-45 184.1 181 55.8
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 1.6e-44 183.3 181 55.2
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 3.6e-44 182.2 179 53.1
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 3.6e-44 182.2 181 55.2
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 3.6e-44 182.2 181 55.8
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 4.7e-44 181.8 181 53.6
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 4.7e-44 181.8 180 55.0
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.1e-44 181.4 181 54.7
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 6.1e-44 181.4 181 55.8
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 6.1e-44 181.4 181 55.8
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 8.0e-44 181.0 185 53.5
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 8.0e-44 181.0 180 55.6
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 1.0e-43 180.6 178 52.8
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 1.0e-43 180.6 181 56.4
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 1.0e-43 180.6 181 53.6
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 1.8e-43 179.9 175 54.9
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.8e-43 179.9 181 55.2
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 3.0e-43 179.1 181 54.1
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 3.0e-43 179.1 179 56.4
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 3.0e-43 179.1 179 55.9
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 3.0e-43 179.1 181 53.0
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.0e-43 179.1 179 53.6
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 5.2e-43 178.3 181 54.1
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 5.2e-43 178.3 180 55.6
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 5.2e-43 178.3 181 58.0
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 5.2e-43 178.3 181 52.5
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 6.8e-43 177.9 178 54.5
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 6.8e-43 177.9 179 57.0
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 8.9e-43 177.6 179 54.2
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 8.9e-43 177.6 181 51.9
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 8.9e-43 177.6 178 54.5
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 1.2e-42 177.2 181 53.6
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 1.2e-42 177.2 181 52.5
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.5e-42 176.8 181 54.1
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 1.5e-42 176.8 181 54.7
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 1.5e-42 176.8 181 53.0
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 2.0e-42 176.4 181 53.0
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 2.0e-42 176.4 179 54.7
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.0e-42 176.4 181 51.9
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.6e-42 176.0 175 55.4
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 2.6e-42 176.0 178 53.9
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 3.4e-42 175.6 179 54.7
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 3.4e-42 175.6 181 54.7
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 4.4e-42 175.3 180 54.4
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 4.4e-42 175.3 181 51.9
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 4.4e-42 175.3 181 53.0
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 4.4e-42 175.3 181 54.1
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 5.7e-42 174.9 178 55.1
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 5.7e-42 174.9 179 53.6
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.7e-42 174.9 178 53.9
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 5.7e-42 174.9 179 53.6
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 5.7e-42 174.9 181 53.0
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 7.5e-42 174.5 178 55.1
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 7.5e-42 174.5 179 53.1
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 9.8e-42 174.1 179 53.1
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 9.8e-42 174.1 177 54.8
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 9.8e-42 174.1 173 53.2
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.7e-41 173.3 179 53.6
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 1.7e-41 173.3 180 52.2
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.7e-41 173.3 179 52.5
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.7e-41 173.3 179 53.6
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 2.2e-41 172.9 181 51.9
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 2.2e-41 172.9 179 54.7
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 2.2e-41 172.9 179 52.0
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.8e-41 172.6 181 53.0
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 2.8e-41 172.6 181 52.5
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 3.7e-41 172.2 181 51.9
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 3.7e-41 172.2 182 53.3
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 4.9e-41 171.8 179 54.2
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 6.3e-41 171.4 179 54.2
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 8.3e-41 171.0 181 53.0
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 8.3e-41 171.0 179 53.6
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 8.3e-41 171.0 181 53.6
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.1e-40 170.6 183 52.5
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 1.1e-40 170.6 182 52.7
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 1.4e-40 170.2 183 52.5
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.4e-40 170.2 179 49.7
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.8e-40 169.9 179 50.3
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.8e-40 169.9 181 53.6
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.8e-40 169.9 179 53.6
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.8e-40 169.9 181 52.5
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.4e-40 169.5 181 52.5
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.4e-40 169.5 180 52.8
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 2.4e-40 169.5 179 54.7
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 2.4e-40 169.5 181 49.7
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 4.1e-40 168.7 173 53.2
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.4e-40 168.3 181 52.5
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 7.0e-40 167.9 177 54.2
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.2e-39 167.2 178 51.1
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 1.2e-39 167.2 175 54.3
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 1.2e-39 167.2 178 51.7
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 2.7e-39 166.0 179 50.3
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 3.5e-39 165.6 178 50.0
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 7.8e-39 164.5 181 50.3
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 1.0e-38 164.1 178 50.0
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.0e-38 164.1 177 52.5
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.3e-38 163.7 179 50.3
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 2.9e-38 162.5 179 48.6
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 2.9e-38 162.5 179 48.6
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 3.9e-38 162.2 182 48.4
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 3.9e-38 162.2 179 50.8
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 5.0e-38 161.8 179 50.3
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 5.0e-38 161.8 179 49.2
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 5.0e-38 161.8 181 53.0
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 6.6e-38 161.4 179 49.2
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.1e-37 160.6 180 48.3
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 1.1e-37 160.6 179 48.0
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 1.5e-37 160.2 179 50.3
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 1.5e-37 160.2 178 51.1
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 4.3e-37 158.7 179 48.0
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 4.3e-37 158.7 179 48.0
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 5.6e-37 158.3 179 48.6
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 1.2e-36 157.1 180 47.2
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.2e-36 157.1 178 49.4
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 1.6e-36 156.8 173 48.6
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 1.0e-35 154.1 178 48.3
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.4e-35 153.7 167 50.3
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.8e-35 153.3 173 47.4
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 5.2e-35 151.8 171 50.9
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 9.2e-32 141.0 83 80.7
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 9.2e-32 141.0 178 43.3
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 6.0e-31 138.3 80 78.8
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.5e-29 132.9 79 78.5
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.6e-28 130.2 83 73.5
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 1.6e-28 130.2 181 40.9
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 2.1e-28 129.8 83 72.3
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 2.8e-28 129.4 75 76.0
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 4.7e-28 128.6 78 70.5
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.8e-27 126.7 75 74.7
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 5.2e-27 125.2 177 41.2
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 2.6e-26 122.9 75 73.3
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.2e-24 114.4 65 81.5
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.1e-23 113.2 65 80.0
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 2.1e-20 103.2 172 37.8
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 1.4e-19 100.5 149 38.9
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.1e-12 76.6 123 40.7
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.8e-11 71.6 127 37.8
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 8.9e-11 71.2 50 68.0
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 7.6e-10 68.2 50 66.0
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 3.8e-09 65.9 50 64.0
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 6.4e-09 65.1 50 64.0
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 3.2e-08 62.8 177 28.2
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 1.2e-07 60.8 52 57.7


User provided reference genes

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