Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 5.8e-126 454.1 215 100.0
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 7.4e-113 410.6 215 88.4
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 4.8e-112 407.9 216 89.4
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 1.1e-111 406.8 215 87.4
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.8e-111 406.0 215 87.4
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 2.2e-109 399.1 215 86.0
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 2.9e-109 398.7 215 87.0
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 3.8e-109 398.3 214 86.0
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 3.8e-109 398.3 214 86.0
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 6.5e-109 397.5 215 86.0
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 8.4e-109 397.1 215 86.0
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 8.4e-109 397.1 215 85.1
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 1.1e-108 396.7 215 86.0
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 1.9e-108 396.0 215 84.7
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 2.5e-108 395.6 216 87.0
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 3.2e-108 395.2 215 86.0
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 7.2e-108 394.0 215 85.1
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 9.3e-108 393.7 215 84.2
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 9.3e-108 393.7 215 84.7
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 1.2e-107 393.3 216 85.6
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 1.2e-107 393.3 215 84.2
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 2.1e-107 392.5 216 85.2
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 2.7e-107 392.1 215 83.7
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 2.7e-107 392.1 215 84.7
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 2.7e-107 392.1 216 86.6
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 2.7e-107 392.1 216 86.6
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 3.5e-107 391.7 219 84.5
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 3.5e-107 391.7 215 82.8
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 3.5e-107 391.7 216 86.6
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 6.1e-107 391.0 213 84.0
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 7.9e-107 390.6 216 84.7
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 7.9e-107 390.6 216 84.7
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 7.9e-107 390.6 215 84.2
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 7.9e-107 390.6 215 84.7
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 1.0e-106 390.2 219 83.1
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 1.8e-106 389.4 215 84.2
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 3.0e-106 388.7 218 83.0
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.1e-106 387.9 216 84.3
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 1.5e-105 386.3 217 84.8
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 1.9e-105 386.0 237 77.2
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 3.3e-105 385.2 215 83.3
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 4.3e-105 384.8 217 84.3
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 5.7e-105 384.4 215 84.2
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 1.3e-104 383.3 217 83.9
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 2.8e-104 382.1 215 84.2
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 3.7e-104 381.7 217 82.5
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 4.8e-104 381.3 216 81.5
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 6.3e-104 380.9 217 82.5
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.8e-103 379.4 215 80.9
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 2.4e-103 379.0 215 82.8
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 3.1e-103 378.6 215 83.3
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 3.1e-103 378.6 231 77.9
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 5.3e-103 377.9 217 82.9
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 6.9e-103 377.5 216 82.4
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 9.0e-103 377.1 248 74.6
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 9.0e-103 377.1 216 82.4
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 1.5e-102 376.3 216 81.9
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 1.5e-102 376.3 210 82.9
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 2.0e-102 375.9 216 81.9
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 4.5e-102 374.8 215 82.8
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 83.3
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 4.5e-102 374.8 225 79.6
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 2.2e-101 372.5 216 81.9
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 3.8e-101 371.7 200 84.5
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 6.5e-101 370.9 216 79.6
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 8.5e-101 370.5 215 81.9
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.1e-100 370.2 200 86.0
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 1.4e-100 369.8 216 79.2
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 1.4e-100 369.8 216 79.2
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 1.4e-100 369.8 220 80.9
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 1.4e-100 369.8 216 79.2
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 5.5e-100 367.9 216 78.7
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 5.5e-100 367.9 186 90.9
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 7.2e-100 367.5 216 78.7
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 9.4e-100 367.1 216 78.7
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 7.9e-99 364.0 216 77.8
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 1.4e-98 363.2 216 78.2
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 1.8e-98 362.8 186 90.3
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 3.9e-98 361.7 215 80.9
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 8.8e-98 360.5 216 77.8
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 8.8e-98 360.5 190 89.5
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 7.4e-97 357.5 241 73.0
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 2.2e-96 355.9 217 77.9
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 2.8e-96 355.5 219 76.3
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 3.1e-95 352.1 198 83.3
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 3.1e-95 352.1 190 85.3
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 9.1e-95 350.5 180 88.9
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 9.1e-95 350.5 219 74.9
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 3.4e-94 348.6 178 88.8
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 5.9e-94 347.8 188 85.1
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 5.9e-94 347.8 198 82.8
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 2.2e-93 345.9 203 77.8
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 6.5e-93 344.4 208 76.9
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 4.2e-92 341.7 203 77.3
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 4.2e-92 341.7 188 83.5
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 9.4e-92 340.5 190 83.2
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 9.4e-92 340.5 203 77.3
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 3.6e-91 338.6 189 83.1
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.5e-89 333.2 196 74.5
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 7.4e-89 330.9 188 79.8
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 2.0e-86 322.8 215 67.9
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 5.9e-86 321.2 192 77.6
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 2.9e-85 318.9 196 70.4
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 7.0e-79 297.7 196 67.9
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 1.5e-73 280.0 199 64.8
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.6e-73 279.3 172 77.9
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.6e-73 279.3 172 77.9
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 4.8e-72 275.0 145 86.9
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 5.0e-69 265.0 145 82.1
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 1.8e-66 256.5 133 87.2
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 1.7e-64 250.0 133 86.5
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 1.8e-63 246.5 133 84.2
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.2e-57 227.3 130 77.7
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.9e-56 222.6 122 82.0
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 9.2e-55 217.6 144 72.9
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.9e-54 214.9 124 79.8
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 6.0e-46 188.3 106 81.1
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.1e-39 167.5 93 81.7
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 1.0e-37 161.0 89 84.3
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 1.8e-34 150.2 86 81.4
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 1.3e-32 144.1 82 80.5
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 4.0e-26 122.5 206 34.5
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 2.4e-23 113.2 209 34.9
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 1.3e-16 90.9 63 69.8
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 3.9e-13 79.3 40 85.0
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 2.8e-11 73.2 64 57.8
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.2e-09 67.8 41 65.9


User provided reference genes

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