Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 0.0e+00 1838.9 913 100.0
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1148.3 1058 56.9
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1142.5 1066 56.3
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1115.1 1067 55.3
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 3.0e-304 1048.5 1114 50.8
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 6.7e-280 967.6 1072 48.7
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 8.1e-278 960.7 1058 47.8
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 2.6e-276 955.7 1064 48.3
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.6e-270 936.4 1069 47.5
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 5.8e-268 927.9 1059 47.8
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 2.9e-267 925.6 1038 48.5
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 4.9e-267 924.9 1071 47.2
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 4.9e-267 924.9 1059 47.6
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 7.1e-266 921.0 1159 44.2
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 6.0e-265 917.9 1056 47.3
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 2.5e-263 912.5 1067 46.5
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 4.8e-262 908.3 1059 46.6
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 1.4e-261 906.7 1061 46.8
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 8.5e-259 897.5 1058 46.3
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 1.1e-258 897.1 1076 46.2
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 4.2e-258 895.2 1063 46.4
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 5.5e-258 894.8 1044 46.1
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 9.3e-258 894.0 1062 46.6
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 1.6e-257 893.3 1060 46.6
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 6.1e-257 891.3 1062 46.4
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.3e-254 883.6 1051 46.2
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 1.7e-254 883.2 1055 45.5
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 2.8e-254 882.5 1068 46.0
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 4.8e-254 881.7 1091 46.7
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 1.4e-253 880.2 1113 44.7
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 4.1e-253 878.6 1059 46.0
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 5.3e-253 878.2 1077 44.3
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 6.9e-253 877.9 1054 45.8
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 1.2e-252 877.1 1012 47.1
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 3.4e-252 875.5 1059 45.8
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 7.7e-252 874.4 1068 45.4
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 1.7e-251 873.2 1055 46.6
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 8.5e-251 870.9 1030 46.5
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 1.9e-250 869.8 1065 45.4
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 2.5e-250 869.4 1086 44.8
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 3.6e-249 865.5 1059 45.1
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 4.7e-249 865.1 1096 45.5
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 6.1e-249 864.8 1078 44.8
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 7.9e-249 864.4 1064 45.5
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 1.4e-248 863.6 1055 45.8
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 3.9e-248 862.1 1076 45.7
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 1.1e-247 860.5 1060 45.2
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 2.6e-247 859.4 1066 44.6
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 3.3e-247 859.0 1058 44.8
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 7.4e-247 857.8 1058 44.8
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 9.7e-247 857.4 1070 44.5
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 1.7e-246 856.7 1063 44.6
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 1.7e-246 856.7 1061 44.6
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 4.8e-246 855.1 1139 43.2
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 4.8e-246 855.1 1078 44.6
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 8.2e-246 854.4 1058 44.7
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 1.1e-245 854.0 1016 45.8
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 1.4e-245 853.6 1058 44.6
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 2.4e-245 852.8 1030 46.4
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 2.0e-244 849.7 1056 44.0
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.0e-244 849.7 1060 44.5
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 4.5e-244 848.6 1051 45.3
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 6.5e-243 844.7 1055 44.5
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 1.9e-242 843.2 1059 43.5
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 9.4e-242 840.9 1061 43.7
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 2.7e-241 839.3 1061 45.8
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 1.0e-240 837.4 1060 43.7
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 3.9e-240 835.5 1061 44.1
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 5.2e-240 835.1 1051 45.5
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 2.0e-239 833.2 1065 44.1
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 2.0e-239 833.2 1066 43.5
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 3.3e-239 832.4 1066 43.7
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 7.4e-239 831.2 1054 43.8
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 6.3e-238 828.2 1058 45.3
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 6.3e-238 828.2 1073 43.2
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 8.2e-238 827.8 1064 43.5
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 7.0e-237 824.7 1065 43.9
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 3.5e-236 822.4 1071 43.0
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 1.3e-235 820.5 1054 43.9
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 7.2e-234 814.7 1085 44.0
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 3.6e-233 812.4 1058 43.1
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 2.2e-230 803.1 1135 41.7
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 5.3e-229 798.5 1062 42.7
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 2.0e-228 796.6 992 45.3
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 2.0e-228 796.6 1018 44.0
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.7e-227 793.5 955 47.3
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 6.5e-227 791.6 1051 42.8
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 5.7e-223 778.5 1058 41.3
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 1.8e-221 773.5 1103 41.6
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 2.1e-209 733.4 1064 40.2
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 1.6e-204 717.2 1046 40.2
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 5.1e-187 659.1 1025 38.9
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 9.5e-186 654.8 879 42.2
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 9.5e-186 654.8 675 53.5
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 2.6e-183 646.7 868 42.9
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 3.9e-163 579.7 1073 34.7
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 4.6e-156 556.2 931 37.9
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 9.3e-149 531.9 618 47.1
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.4e-144 518.1 685 42.6
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 3.8e-134 483.4 622 44.9
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 8.8e-131 472.2 839 37.7
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 4.4e-130 469.9 735 39.6
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 3.7e-129 466.8 593 45.5
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 3.1e-128 463.8 507 46.9
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 6.5e-118 429.5 554 44.2
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 1.8e-115 421.4 1001 30.5
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 4.4e-114 416.8 582 39.5
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 1.1e-112 412.1 1045 31.3
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 3.1e-112 410.6 347 57.1
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 7.0e-112 409.5 773 34.5
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 9.1e-112 409.1 514 43.0
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 4.7e-108 396.7 578 41.0
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.1e-104 383.6 468 43.8
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 3.7e-97 360.5 874 30.3
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 7.3e-93 346.3 307 57.3
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 2.0e-87 328.2 303 55.1
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 1.7e-78 298.5 374 44.1
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 1.1e-75 289.3 220 61.4
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 2.9e-73 281.2 359 43.5
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.2e-63 249.2 347 41.2
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 2.4e-59 235.0 221 51.6
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 5.3e-59 233.8 291 44.0
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 1.5e-58 232.3 848 26.8
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.5e-58 232.3 205 54.6
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 2.6e-58 231.5 307 44.3
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 3.4e-58 231.1 244 48.0
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 7.6e-58 229.9 197 54.8
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 6.9e-51 206.8 255 43.9
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-36 159.5 238 39.1
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 5.8e-34 150.6 126 57.9
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.3e-33 149.4 199 40.2
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 5.0e-33 147.5 210 40.0
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 5.7e-29 134.0 797 23.1
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 1.6e-28 132.5 100 57.0
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 4.1e-27 127.9 111 57.7
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 5.3e-27 127.5 274 33.6
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.6e-23 114.4 128 54.7
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 1.8e-22 112.5 103 53.4
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 6.7e-22 110.5 795 22.6
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 1.4e-19 102.8 154 36.4
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 3.8e-17 94.7 305 25.6
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 1.4e-16 92.8 109 42.2
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 1.9e-16 92.4 87 51.7
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 3.6e-15 88.2 85 51.8
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 1.8e-14 85.9 67 58.2
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 5.7e-13 80.9 106 42.5
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 6.3e-12 77.4 62 51.6
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 8.2e-12 77.0 105 39.0
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 4.1e-11 74.7 70 52.9
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 2.0e-10 72.4 70 50.0
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 4.5e-10 71.2 77 49.4
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.9e-09 68.6 126 34.9
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 3.0e-06 58.5 67 44.8


User provided reference genes

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