Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20769 Utricularia gibba HOM05D007602 ORTHO05D009086 1.5e-33 145.6 72 100.0
Phvul.011G049200 Phaseolus vulgaris HOM05D007602 ORTHO05D009086 3.4e-14 81.3 40 95.0
Ca_07356_v3 Cicer arietinum L. HOM05D007602 ORTHO05D009086 1.7e-13 79.0 40 90.0
Glyma.11G122300 Glycine max HOM05D007602 ORTHO05D009086 3.8e-13 77.8 40 90.0
Lj3g0015904 Lotus japonicus HOM05D007602 ORTHO05D009086 8.5e-13 76.6 40 87.5
Potri.004G149200 Populus trichocarpa HOM05D007602 ORTHO05D009086 8.5e-13 76.6 40 87.5
Prupe.8G107900 Prunus persica HOM05D007602 ORTHO05D009086 8.5e-13 76.6 40 87.5
Sabra04G0099200 Salix brachista HOM05D007602 ORTHO05D009086 8.5e-13 76.6 40 87.5
Migut.B00282 Erythranthe guttata HOM05D007602 ORTHO05D009086 1.1e-12 76.3 40 85.0
Glyma.12G047200 Glycine max HOM05D007602 ORTHO05D009086 1.1e-12 76.3 40 87.5
AT1G49410 Arabidopsis thaliana HOM05D007602 ORTHO05D009086 1.9e-12 75.5 40 82.5
Medtr4g068710 Medicago truncatula HOM05D007602 ORTHO05D009086 1.9e-12 75.5 45 75.6
CAN.G322.99 Capsicum annuum HOM05D007602 ORTHO05D009086 2.5e-12 75.1 40 82.5
Cfa004963 Carpinus fangiana HOM05D007602 ORTHO05D009086 2.5e-12 75.1 40 85.0
Haze_02438 Corylus avellana HOM05D007602 ORTHO05D009086 2.5e-12 75.1 40 85.0
MELO3C021943.2 Cucumis melo HOM05D007602 ORTHO05D009086 2.5e-12 75.1 40 85.0
CsaV3_2G014370 Cucumis sativus L. HOM05D007602 ORTHO05D009086 2.5e-12 75.1 40 85.0
Lalb_Chr03g0025901 Lupinus albus HOM05D007602 ORTHO05D009086 2.5e-12 75.1 42 81.0
Sed0020423 Sechium edule HOM05D007602 ORTHO05D009086 2.5e-12 75.1 40 85.0
Solyc01g109220.4 Solanum lycopersicum HOM05D007602 ORTHO05D009086 2.5e-12 75.1 40 82.5
PGSC0003DMG400025161 Solanum tuberosum HOM05D007602 ORTHO05D009086 2.5e-12 75.1 40 82.5
Glyma.12G082000 Glycine max HOM05D007602 ORTHO05D009086 3.2e-12 74.7 40 87.5
Manes.17G097600 Manihot esculenta HOM05D007602 ORTHO05D009086 3.2e-12 74.7 40 80.0
Carub.0001s3861 Capsella rubella HOM05D007602 ORTHO05D009086 4.2e-12 74.3 40 80.0
Ciclev10029767m.g Citrus clementina HOM05D007602 ORTHO05D009086 4.2e-12 74.3 40 82.5
Gohir.A04G129200 Gossypium hirsutum HOM05D007602 ORTHO05D009086 4.2e-12 74.3 40 80.0
Gorai.012G163800 Gossypium raimondii HOM05D007602 ORTHO05D009086 4.2e-12 74.3 40 80.0
Manes.15G146500 Manihot esculenta HOM05D007602 ORTHO05D009086 4.2e-12 74.3 40 80.0
PGR042G2915 Punica granatum HOM05D007602 ORTHO05D009086 5.5e-12 73.9 40 82.5
Aa31LG10G4570 Aethionema arabicum HOM05D007602 ORTHO05D009086 7.2e-12 73.6 40 85.0
AL1G56570 Arabidopsis lyrata HOM05D007602 ORTHO05D009086 7.2e-12 73.6 40 77.5
ClCG09G017780 Citrullus lanatus HOM05D007602 ORTHO05D009086 7.2e-12 73.6 40 82.5
Lalb_Chr01g0002891 Lupinus albus HOM05D007602 ORTHO05D009086 7.2e-12 73.6 42 76.2
CANSAT25G1814 Cannabis sativa HOM05D007602 ORTHO05D009086 9.4e-12 73.2 40 80.0
CiPaw.05G059500 Carya illinoinensis HOM05D007602 ORTHO05D009086 9.4e-12 73.2 40 80.0
Duzib132G1115 Durio zibethinus HOM05D007602 ORTHO05D009086 9.4e-12 73.2 40 80.0
Gohir.A04G129300 Gossypium hirsutum HOM05D007602 ORTHO05D009086 9.4e-12 73.2 40 80.0
Gohir.D04G174400 Gossypium hirsutum HOM05D007602 ORTHO05D009086 9.4e-12 73.2 40 80.0
Gorai.012G163900 Gossypium raimondii HOM05D007602 ORTHO05D009086 9.4e-12 73.2 40 80.0
Potri.009G110100 Populus trichocarpa HOM05D007602 ORTHO05D009086 9.4e-12 73.2 40 80.0
THA.LOC104798806 Tarenaya hassleriana HOM05D007602 ORTHO05D009086 9.4e-12 73.2 40 80.0
THA.LOC104808449 Tarenaya hassleriana HOM05D007602 ORTHO05D009086 9.4e-12 73.2 40 80.0
Thecc.08G131300 Theobroma cacao HOM05D007602 ORTHO05D009086 9.4e-12 73.2 40 80.0
Lsat_1_v5_gn_9_109200 Lactuca sativa HOM05D007602 ORTHO05D009086 1.2e-11 72.8 40 82.5
COL.COLO4_17788 Corchorus olitorius HOM05D007602 ORTHO05D009086 1.6e-11 72.4 40 80.0
Cpa.g.sc62.91 Carica papaya HOM05D007602 ORTHO05D009086 2.1e-11 72.0 42 73.8
Gohir.D04G174300 Gossypium hirsutum HOM05D007602 ORTHO05D009086 2.7e-11 71.6 40 77.5
Gorai.004G104500 Gossypium raimondii HOM05D007602 ORTHO05D009086 2.7e-11 71.6 40 77.5
Oeu007232.1 Olea europaea HOM05D007602 ORTHO05D009086 2.7e-11 71.6 40 80.0
CARHR039420 Cardamine hirsuta HOM05D007602 ORTHO05D009086 4.6e-11 70.9 40 75.0
BcaB02g11073 Brassica carinata HOM05D007602 ORTHO05D009086 6.1e-11 70.5 40 75.0
MD10G1085000 Malus domestica HOM05D007602 ORTHO05D009086 6.1e-11 70.5 42 83.3
Sed0019655 Sechium edule HOM05D007602 ORTHO05D009086 6.1e-11 70.5 40 77.5
SGA_v2.0_scaffold32G13134 Striga asiatica HOM05D000790 ORTHO05D000769 6.1e-11 70.5 38 81.6
BcaB04g17343 Brassica carinata HOM05D007602 ORTHO05D009086 7.9e-11 70.1 40 75.0
Thecc.02G030000 Theobroma cacao HOM05D007602 ORTHO05D009086 7.9e-11 70.1 40 75.0
VMungo1127G0479 Vigna mungo HOM05D007602 ORTHO05D009086 7.9e-11 70.1 36 91.7
Thhalv10011932m.g Eutrema salsugineum HOM05D007602 ORTHO05D009086 1.0e-10 69.7 39 76.9
Duzib248G0323 Durio zibethinus HOM05D007602 ORTHO05D009086 1.4e-10 69.3 40 75.0
Duzib248G0595 Durio zibethinus HOM05D007602 ORTHO05D009086 1.4e-10 69.3 40 75.0
Duzib248G1495 Durio zibethinus HOM05D007602 ORTHO05D009086 1.4e-10 69.3 40 75.0
Hma1.2p1_0584F.1_g183350 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 1.4e-10 69.3 40 75.0
Lj5E203T0 Lonicera japonica HOM05D007602 ORTHO05D009086 1.8e-10 68.9 40 77.5
CSS0038117 Camellia sinensis var. sinensis HOM05D007602 ORTHO05D009086 2.3e-10 68.6 40 75.0
FAN20G1774 Fragaria x ananassa HOM05D007602 ORTHO05D009086 2.3e-10 68.6 40 77.5
Hma1.2p1_1353F.1_g277670 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 2.3e-10 68.6 40 75.0
Hma1.2p1_2724F.1_g327525 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 2.3e-10 68.6 40 75.0
TWI31G0092 Tripterygium wilfordii HOM05D007602 ORTHO05D009086 2.3e-10 68.6 40 80.0
A08p03960 Brassica napus HOM05D007602 ORTHO05D009086 3.9e-10 67.8 40 75.0
RcHm_v2.0_Chr6g0262021 Rosa chinensis HOM05D007602 ORTHO05D009086 5.1e-10 67.4 40 75.0
Glyma.16G059100 Glycine max HOM05D007602 ORTHO05D009086 1.1e-09 66.2 36 86.1
MD00G1073700 Malus domestica HOM05D007602 ORTHO05D009086 1.1e-09 66.2 42 78.6
MD11G1171200 Malus domestica HOM05D007602 ORTHO05D009086 2.0e-09 65.5 42 76.2
Nn5g29445 Nelumbo nucifera HOM05D007602 ORTHO05D009086 4.3e-09 64.3 40 75.0
Nitab4.5_0003281g0040 Nicotiana tabacum HOM05D007602 ORTHO05D009086 4.3e-09 64.3 34 82.4
Nitab4.5_0003816g0110 Nicotiana tabacum HOM05D007602 ORTHO05D009086 4.3e-09 64.3 34 82.4
Peaxi162Scf00016g01124 Petunia axillaris HOM05D007602 ORTHO05D009086 4.3e-09 64.3 34 82.4
Atru.chr12.1346 Acer truncatum HOM05D007602 ORTHO05D009086 7.4e-09 63.5 40 70.0
Nn6g32178 Nelumbo nucifera HOM05D007602 ORTHO05D009086 2.8e-08 61.6 40 67.5
TAR381G0702 Trochodendron aralioides HOM05D007602 ORTHO05D009086 2.8e-08 61.6 40 67.5
AUR62037762 Chenopodium quinoa HOM05D007602 ORTHO05D009086 6.3e-08 60.5 45 62.2
CSS0032371 Camellia sinensis var. sinensis HOM05D007602 ORTHO05D009086 1.1e-07 59.7 61 47.5
ECA240G4508 Erigeron canadensis HOM05D007602 ORTHO05D009086 1.1e-07 59.7 37 70.3
SHI05446 Sapria himalayana HOM05D007602 ORTHO05D009086 1.1e-07 59.7 35 74.3
Aa31LG8G5770 Aethionema arabicum HOM05D000086 ORTHO05D008850 2.4e-07 58.5 40 70.0
DCAR_022083 Daucus carota HOM05D007602 ORTHO05D009086 2.4e-07 58.5 40 70.0
AUR62038779 Chenopodium quinoa HOM05D007602 ORTHO05D009086 6.9e-07 57.0 41 63.4
vmacro19447 Vaccinium macrocarpon HOM05D007602 ORTHO05D009086 6.9e-07 57.0 33 75.8
Ah.01g019750 Amaranthus hybridus HOM05D007602 ORTHO05D009086 1.5e-06 55.8 41 63.4
Psat7g206800 Pisum sativum HOM05D007602 ORTHO05D009086 2.0e-06 55.5 32 81.2
BcaC07g37055 Brassica carinata HOM05D003421 ORTHO05D009086 2.6e-06 55.1 31 74.2
vmacro23386 Vaccinium macrocarpon HOM05D007602 ORTHO05D009086 3.4e-06 54.7 33 69.7


User provided reference genes

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