Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 2.3e-58 228.8 122 100.0
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 4.3e-41 171.4 122 73.0
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 1.8e-31 139.4 123 64.2
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.5e-30 136.3 120 66.7
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 2.6e-30 135.6 122 63.1
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 4.4e-30 134.8 121 63.6
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 4.9e-29 131.3 123 61.8
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 4.9e-29 131.3 117 64.1
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 4.9e-29 131.3 121 60.3
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 8.4e-29 130.6 121 59.5
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 1.4e-28 129.8 123 62.6
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 1.9e-28 129.4 122 60.7
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 3.2e-28 128.6 119 57.1
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 4.2e-28 128.3 123 61.8
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 4.2e-28 128.3 123 59.3
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 5.4e-28 127.9 121 57.9
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 9.3e-28 127.1 119 58.0
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 9.3e-28 127.1 123 62.6
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.2e-27 126.7 120 56.7
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.6e-27 126.3 120 58.3
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.1e-27 125.9 124 61.3
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 2.7e-27 125.6 124 61.3
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.7e-27 125.6 120 58.3
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.5e-27 125.2 123 60.2
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.5e-27 125.2 123 60.2
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 3.5e-27 125.2 124 58.1
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 4.6e-27 124.8 122 59.8
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 4.6e-27 124.8 109 62.4
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 6.0e-27 124.4 122 59.8
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 6.0e-27 124.4 123 61.8
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 6.0e-27 124.4 124 57.3
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 6.0e-27 124.4 124 60.5
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 7.8e-27 124.0 122 56.6
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 7.8e-27 124.0 110 62.7
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.8e-27 124.0 123 61.8
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 7.8e-27 124.0 124 57.3
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 1.0e-26 123.6 123 57.7
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.0e-26 123.6 121 57.0
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.0e-26 123.6 121 62.8
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 1.3e-26 123.2 122 57.4
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 1.3e-26 123.2 124 61.3
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 1.7e-26 122.9 122 59.8
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.7e-26 122.9 124 59.7
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 1.7e-26 122.9 122 62.3
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 2.3e-26 122.5 123 61.0
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.3e-26 122.5 123 61.0
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.3e-26 122.5 123 61.8
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.3e-26 122.5 123 61.0
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 3.0e-26 122.1 122 58.2
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.0e-26 122.1 123 59.3
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.0e-26 122.1 123 61.8
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 3.0e-26 122.1 125 59.2
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 3.9e-26 121.7 124 60.5
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 3.9e-26 121.7 123 61.8
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.9e-26 121.7 123 61.0
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.9e-26 121.7 123 61.8
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.1e-26 121.3 123 62.6
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.1e-26 121.3 123 57.7
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 6.6e-26 120.9 94 68.1
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 6.6e-26 120.9 93 69.9
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 6.6e-26 120.9 126 60.3
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.7e-26 120.6 123 60.2
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 8.7e-26 120.6 123 59.3
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.1e-25 120.2 121 59.5
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 1.1e-25 120.2 120 56.7
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 1.1e-25 120.2 124 58.9
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 1.5e-25 119.8 122 56.6
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 1.9e-25 119.4 123 58.5
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 2.5e-25 119.0 123 56.1
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 2.5e-25 119.0 122 57.4
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 3.3e-25 118.6 112 62.5
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 4.3e-25 118.2 124 56.5
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 4.3e-25 118.2 122 59.8
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 5.6e-25 117.9 122 57.4
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 5.6e-25 117.9 123 58.5
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.3e-25 117.5 123 59.3
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.3e-25 117.5 123 57.7
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 9.6e-25 117.1 95 66.3
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.6e-25 117.1 123 57.7
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 1.3e-24 116.7 123 56.9
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 1.3e-24 116.7 123 57.7
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.6e-24 116.3 124 54.0
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 1.6e-24 116.3 121 55.4
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 2.8e-24 115.5 95 68.4
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 2.8e-24 115.5 125 54.4
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 3.6e-24 115.2 122 56.6
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 4.8e-24 114.8 119 55.5
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 4.8e-24 114.8 113 59.3
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 6.2e-24 114.4 122 56.6
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 6.2e-24 114.4 124 54.8
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 8.1e-24 114.0 122 54.1
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.4e-23 113.2 124 54.8
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 1.4e-23 113.2 122 55.7
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 1.8e-23 112.8 118 53.4
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 1.8e-23 112.8 116 53.4
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 1.8e-23 112.8 120 56.7
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 1.8e-23 112.8 125 55.2
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 2.4e-23 112.5 92 69.6
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.4e-23 112.5 92 66.3
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 2.4e-23 112.5 126 53.2
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 3.1e-23 112.1 123 55.3
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 3.1e-23 112.1 123 55.3
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 3.1e-23 112.1 123 55.3
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 3.1e-23 112.1 113 57.5
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 3.1e-23 112.1 123 55.3
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 4.0e-23 111.7 123 53.7
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 4.0e-23 111.7 124 50.0
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 5.3e-23 111.3 119 56.3
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 5.3e-23 111.3 120 52.5
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 6.9e-23 110.9 123 55.3
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 6.9e-23 110.9 123 55.3
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 6.9e-23 110.9 123 55.3
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 6.9e-23 110.9 122 54.1
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 9.0e-23 110.5 125 54.4
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 9.0e-23 110.5 124 53.2
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 1.2e-22 110.2 105 61.0
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 1.2e-22 110.2 105 61.0
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 1.2e-22 110.2 127 57.5
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 1.2e-22 110.2 123 53.7
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 1.2e-22 110.2 123 53.7
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 1.5e-22 109.8 123 54.5
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 1.5e-22 109.8 122 55.7
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 1.5e-22 109.8 125 53.6
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 1.5e-22 109.8 97 60.8
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 1.5e-22 109.8 124 50.8
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 1.5e-22 109.8 112 59.8
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 1.5e-22 109.8 123 53.7
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 2.0e-22 109.4 125 53.6
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 2.6e-22 109.0 111 55.9
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 2.6e-22 109.0 95 63.2
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 3.4e-22 108.6 123 56.1
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 4.4e-22 108.2 93 63.4
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 5.8e-22 107.8 119 57.1
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 9.9e-22 107.1 95 62.1
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 1.3e-21 106.7 95 62.1
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.2e-21 105.9 123 51.2
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.9e-20 102.8 126 50.8
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 2.4e-20 102.4 93 60.2
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 7.1e-20 100.9 127 52.0
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.6e-19 99.8 126 48.4
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 2.1e-19 99.4 108 52.8
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 6.0e-19 97.8 106 52.8
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 7.9e-19 97.4 120 49.2
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 7.9e-19 97.4 117 48.7
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 1.7e-18 96.3 93 57.0
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 3.0e-18 95.5 124 49.2
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.5e-17 93.2 94 56.4
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 4.3e-17 91.7 93 54.8
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 6.2e-16 87.8 105 51.4
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.4e-15 86.7 118 42.4
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 4.0e-15 85.1 86 54.7
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 6.9e-15 84.3 120 40.8
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 5.8e-14 81.3 126 48.4
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 5.4e-12 74.7 70 58.6
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 9.3e-12 73.9 50 74.0
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 1.2e-11 73.6 125 38.4
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 1.0e-10 70.5 78 53.8
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 1.0e-10 70.5 88 47.7
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 2.3e-10 69.3 44 79.5
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 6.7e-10 67.8 85 45.9
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 2.0e-06 56.2 73 49.3
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 7.6e-06 54.3 105 35.2


User provided reference genes

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