Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 6.0e-270 933.7 517 100.0
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 4.2e-138 495.7 537 57.7
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 9.3e-138 494.6 544 54.4
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 1.5e-135 487.3 542 52.4
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 4.1e-133 479.2 536 57.8
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 6.1e-129 465.3 544 54.2
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 1.3e-126 457.6 512 50.8
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 4.5e-124 449.1 517 50.3
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 1.4e-122 444.1 513 50.5
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 4.7e-121 439.1 527 49.9
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 7.0e-117 425.2 496 49.2
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 9.1e-117 424.9 515 48.9
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 1.6e-116 424.1 548 46.0
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 6.5e-115 418.7 547 46.1
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 3.2e-114 416.4 538 48.9
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 5.5e-114 415.6 547 45.7
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 7.2e-114 415.2 541 46.2
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 2.1e-113 413.7 519 47.8
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 2.7e-113 413.3 531 47.6
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 6.1e-113 412.1 498 47.8
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 6.1e-113 412.1 512 49.0
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 4.0e-112 409.5 541 46.0
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 5.2e-112 409.1 510 48.2
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 6.7e-112 408.7 509 48.3
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.0e-111 407.1 511 46.8
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 3.3e-111 406.4 496 51.4
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 4.8e-110 402.5 547 45.0
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 8.2e-110 401.7 518 49.6
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 1.1e-109 401.4 508 46.3
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 1.1e-109 401.4 520 49.8
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 4.1e-109 399.4 549 47.0
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 4.1e-109 399.4 538 44.6
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 5.3e-109 399.1 545 46.1
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 7.0e-109 398.7 528 45.3
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 7.0e-109 398.7 529 49.0
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 9.1e-109 398.3 512 46.7
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.2e-108 397.9 547 45.7
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 1.2e-108 397.9 566 44.7
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 2.9e-107 393.3 495 48.3
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 2.9e-107 393.3 538 45.2
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 3.8e-107 392.9 555 46.1
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 1.1e-106 391.3 550 47.6
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 3.2e-106 389.8 513 47.2
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 9.4e-106 388.3 517 45.1
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 9.4e-106 388.3 441 50.1
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 2.7e-105 386.7 397 54.2
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 2.7e-105 386.7 533 43.9
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 1.4e-104 384.4 451 48.8
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 1.8e-104 384.0 439 48.5
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 5.2e-104 382.5 556 46.6
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 8.8e-104 381.7 536 44.8
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 1.5e-103 380.9 513 47.4
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 2.0e-103 380.6 542 44.1
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 2.0e-103 380.6 555 44.3
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 3.4e-103 379.8 555 44.3
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 4.4e-103 379.4 550 43.5
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 3.7e-102 376.3 519 44.5
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 3.7e-102 376.3 519 44.5
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 4.8e-102 375.9 528 44.7
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 4.8e-102 375.9 494 47.0
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 2.4e-101 373.6 540 43.9
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 2.4e-101 373.6 450 47.8
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 5.4e-101 372.5 494 46.0
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 7.0e-101 372.1 544 44.9
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 7.0e-101 372.1 551 44.5
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 2.0e-100 370.5 536 43.5
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 4.5e-100 369.4 532 46.6
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 4.5e-100 369.4 502 44.8
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 1.0e-99 368.2 533 44.1
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 1.0e-99 368.2 446 47.5
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 1.3e-99 367.9 532 43.8
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 2.3e-99 367.1 424 49.8
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 2.9e-99 366.7 431 48.5
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 5.0e-99 365.9 555 43.8
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 5.0e-99 365.9 531 46.9
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 6.5e-99 365.5 533 42.4
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 4.2e-98 362.8 527 44.4
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 9.5e-98 361.7 445 48.5
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.6e-97 360.9 543 44.8
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 2.1e-97 360.5 506 46.8
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 4.7e-97 359.4 565 44.4
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 1.0e-96 358.2 535 43.7
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 3.0e-96 356.7 438 47.3
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 3.0e-96 356.7 526 42.6
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 3.0e-96 356.7 427 49.4
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 6.8e-96 355.5 555 40.5
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 8.9e-96 355.1 546 41.4
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 8.9e-96 355.1 546 41.4
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 2.6e-95 353.6 427 48.5
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 3.4e-95 353.2 548 44.5
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 7.5e-95 352.1 536 42.4
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 1.7e-94 350.9 538 42.0
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 2.8e-94 350.1 558 39.8
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 3.7e-94 349.7 399 49.6
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 4.9e-94 349.4 548 43.8
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 8.3e-94 348.6 553 41.6
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 1.8e-93 347.4 501 41.7
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 4.1e-93 346.3 496 45.0
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 5.9e-92 342.4 508 40.4
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.3e-91 341.3 410 49.8
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 2.5e-90 337.0 531 39.5
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 5.6e-90 335.9 436 46.8
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 9.5e-90 335.1 429 47.3
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 1.4e-88 331.3 378 50.5
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 4.0e-88 329.7 438 42.2
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 5.2e-88 329.3 373 48.8
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 5.8e-87 325.9 380 50.3
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 2.2e-86 323.9 391 45.5
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 2.3e-80 303.9 379 48.3
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 1.6e-76 291.2 302 51.3
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 7.8e-76 288.9 341 51.6
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 3.9e-75 286.6 277 57.0
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 3.9e-75 286.6 277 57.0
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 5.1e-75 286.2 316 48.1
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 6.8e-72 275.8 357 46.5
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 2.1e-68 264.2 555 32.3
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 1.9e-66 257.7 503 37.8
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 3.3e-66 256.9 335 46.9
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 3.1e-64 250.4 523 32.9
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 1.1e-61 241.9 510 32.5
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 2.1e-60 237.7 213 59.2
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 2.4e-56 224.2 418 36.1
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 1.5e-55 221.5 343 44.3
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 1.1e-53 215.3 261 45.6
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 2.6e-47 194.1 593 30.9
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 3.4e-47 193.7 271 45.4
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 3.1e-40 170.6 320 40.9
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 9.0e-40 169.1 205 46.8
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 1.4e-32 145.2 184 45.1
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 1.1e-26 125.6 172 44.2
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 5.7e-26 123.2 259 32.8
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 2.2e-25 121.3 163 46.6
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 7.9e-20 102.8 239 38.9
Atru.chr13.510 Acer truncatum HOM05D004816 ORTHO05D006043 1.8e-16 91.7 135 39.3
Atru.chr8.2607 Acer truncatum HOM05D004816 ORTHO05D006043 1.8e-16 91.7 135 39.3
TWI79G0508 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 5.3e-16 90.1 134 38.8
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 3.8e-14 84.0 191 42.4
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 6.5e-14 83.2 129 38.8
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 2.1e-12 78.2 66 59.1
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 8.8e-11 72.8 95 44.2
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 7.4e-10 69.7 76 46.1
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 9.7e-10 69.3 75 53.3
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 3.1e-08 64.3 93 46.2
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 9.1e-08 62.8 149 34.9
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 3.5e-07 60.8 108 38.9
Duzib052G0890 Durio zibethinus HOM05D004816 ORTHO05D006043 2.9e-06 57.8 68 44.1


User provided reference genes

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