Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 0.0e+00 1471.4 737 100.0
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 5.7e-306 1053.9 885 64.3
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 3.7e-305 1051.2 882 63.9
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 9.1e-304 1046.6 888 64.2
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 8.0e-300 1033.5 884 63.7
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 8.8e-299 1030.0 904 63.2
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 3.7e-297 1024.6 885 63.1
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 1.5e-293 1012.7 890 61.3
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 2.7e-292 1008.4 882 62.0
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 3.8e-286 988.0 874 61.6
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 8.6e-286 986.9 889 60.0
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 2.5e-285 985.3 888 60.5
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 4.2e-285 984.6 878 60.5
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 9.5e-285 983.4 878 60.7
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 2.1e-284 982.2 895 60.0
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 2.8e-284 981.9 895 60.1
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 2.8e-284 981.9 878 60.6
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 3.6e-284 981.5 895 60.0
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 6.1e-284 980.7 890 59.7
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 4.0e-283 978.0 891 58.9
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 6.8e-283 977.2 890 60.1
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 6.8e-283 977.2 890 59.2
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 1.2e-282 976.5 871 59.9
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 5.7e-282 974.2 882 59.5
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 2.8e-281 971.8 887 59.4
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 3.7e-281 971.5 837 62.1
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 8.3e-281 970.3 836 61.0
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 1.8e-280 969.1 879 60.2
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 2.0e-279 965.7 899 59.1
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 2.0e-279 965.7 889 58.7
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 2.7e-279 965.3 880 60.8
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 4.5e-279 964.5 886 58.7
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 5.9e-279 964.1 888 59.0
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 7.8e-279 963.8 879 59.7
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.0e-278 963.4 887 59.4
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 1.0e-278 963.4 896 58.9
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 3.8e-278 961.4 883 60.0
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 2.5e-277 958.7 895 58.2
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 5.6e-277 957.6 805 62.1
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.2e-276 956.4 889 58.5
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 2.8e-276 955.3 895 57.9
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 2.8e-276 955.3 872 58.9
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 2.8e-276 955.3 883 59.1
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 6.1e-276 954.1 890 59.4
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 6.1e-276 954.1 889 58.3
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 6.1e-276 954.1 896 57.8
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.4e-275 953.0 892 57.8
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 5.2e-275 951.0 827 61.1
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 1.5e-274 949.5 885 58.8
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 1.5e-274 949.5 905 57.9
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 2.0e-274 949.1 806 61.8
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 2.6e-274 948.7 893 58.2
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 2.9e-273 945.3 920 57.2
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 8.3e-273 943.7 904 57.7
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 1.4e-272 943.0 892 57.6
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 4.1e-272 941.4 863 57.4
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 1.6e-271 939.5 886 58.5
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 2.7e-271 938.7 992 54.3
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 6.0e-271 937.6 863 57.2
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 1.7e-270 936.0 885 57.6
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 1.7e-270 936.0 893 57.9
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 3.0e-270 935.3 818 60.3
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 8.6e-270 933.7 865 57.8
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 8.6e-270 933.7 824 59.6
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 1.1e-269 933.3 879 57.5
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 1.1e-269 933.3 882 58.0
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 1.5e-269 932.9 812 61.0
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 2.5e-269 932.2 923 56.4
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 2.5e-269 932.2 863 57.6
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 4.3e-269 931.4 822 59.0
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 5.6e-269 931.0 880 59.3
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 7.3e-269 930.6 884 56.8
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 3.6e-268 928.3 868 57.1
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 3.6e-268 928.3 883 57.5
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 1.4e-267 926.4 863 56.8
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 3.1e-267 925.2 870 56.8
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 4.0e-267 924.9 841 59.6
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 5.2e-267 924.5 822 59.0
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 1.2e-266 923.3 822 59.0
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 7.5e-266 920.6 822 58.9
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 9.8e-266 920.2 822 58.8
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 9.8e-266 920.2 859 56.8
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 9.8e-266 920.2 884 57.0
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 1.7e-265 919.5 918 55.8
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 2.2e-265 919.1 860 58.7
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 4.9e-265 917.9 881 56.6
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 8.3e-265 917.1 802 60.0
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 1.1e-264 916.8 869 56.6
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 1.6e-263 912.9 852 57.3
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 1.6e-263 912.9 973 54.4
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 2.1e-263 912.5 972 52.9
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 6.0e-263 911.0 814 58.7
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 2.5e-261 905.6 866 56.7
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 1.2e-260 903.3 875 56.3
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 4.7e-260 901.4 863 56.3
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 3.1e-259 898.7 876 55.3
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 3.1e-259 898.7 872 55.5
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 4.0e-259 898.3 872 55.5
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 1.5e-258 896.3 892 56.3
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 1.5e-258 896.3 894 56.2
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 1.3e-257 893.3 878 55.2
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 1.1e-256 890.2 877 55.0
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 1.9e-256 889.4 877 55.3
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 1.9e-256 889.4 902 54.1
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 3.2e-256 888.6 874 55.1
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 7.1e-256 887.5 872 55.5
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 1.4e-248 863.2 993 51.1
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 2.4e-248 862.4 775 59.0
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 3.0e-246 855.5 874 54.6
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 2.8e-244 849.0 818 55.4
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.6e-236 823.2 824 53.5
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 9.0e-235 817.4 829 55.4
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 5.4e-232 808.1 750 57.6
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 6.9e-219 764.6 676 60.2
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 2.0e-218 763.1 755 56.4
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 3.4e-218 762.3 720 56.7
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 1.4e-216 756.9 753 53.5
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 1.7e-204 716.8 831 47.8
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 2.8e-196 689.5 816 47.4
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 6.5e-177 625.2 810 42.2
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 8.5e-177 624.8 908 44.1
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 1.1e-176 624.4 908 43.9
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 3.6e-175 619.4 820 43.0
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 7.7e-170 601.7 780 43.6
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 2.3e-166 590.1 604 53.1
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 1.1e-163 581.3 578 53.6
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.3e-158 563.5 431 68.4
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 1.7e-153 547.4 681 44.3
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 8.0e-151 538.5 408 66.9
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.6e-138 497.7 319 78.4
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 6.6e-137 492.3 541 51.9
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 2.5e-128 463.8 783 35.4
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 4.4e-125 453.0 402 60.7
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 6.6e-121 439.1 319 66.8
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.9e-120 437.6 530 48.3
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.6e-119 433.3 478 54.2
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.5e-107 394.0 446 53.4
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 7.1e-107 392.5 576 41.1
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 6.9e-102 375.9 247 78.1
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.6e-95 354.8 267 68.5
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 3.7e-95 353.6 308 57.8
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.0e-92 345.5 312 58.0
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 6.9e-86 322.8 315 54.0
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 7.4e-80 302.8 154 89.0
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.8e-79 300.8 235 68.5
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.7e-71 275.0 408 43.6
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.6e-69 268.5 1026 25.6
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 3.1e-62 244.2 196 58.7
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.7e-58 230.3 782 25.8
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 4.0e-57 227.3 775 25.4
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.3e-55 222.2 772 25.3
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.0e-44 183.7 145 62.8
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 5.6e-43 180.3 188 48.4
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 4.7e-42 177.2 152 57.9
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.6e-37 162.2 137 55.5
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 6.0e-37 160.2 154 55.2
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 1.0e-36 159.5 220 41.8
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.8e-34 151.4 644 24.7
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 6.8e-33 146.7 113 55.8
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 4.9e-31 140.6 162 42.6
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 2.4e-30 138.3 149 46.3
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 4.3e-27 127.5 152 53.3
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 6.4e-23 113.6 136 39.0
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 7.1e-22 110.2 137 39.4
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 1.2e-21 109.4 543 21.7
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.6e-21 109.0 81 64.2
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.6e-13 82.4 74 62.2
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 3.9e-12 77.8 112 35.7
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 6.6e-12 77.0 77 50.6
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 5.6e-11 73.9 55 61.8
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.8e-09 68.9 51 58.8
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 2.6e-08 65.1 104 43.3
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 1.3e-07 62.8 51 60.8
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 7.1e-06 57.0 36 69.4
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 9.3e-06 56.6 78 42.3


User provided reference genes

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