Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 5.7e-225 783.9 382 100.0
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 2.0e-137 493.0 328 69.8
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 2.2e-136 489.6 329 70.5
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 9.3e-135 484.2 328 70.1
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 9.3e-135 484.2 328 70.1
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 1.8e-133 479.9 329 70.2
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 3.9e-133 478.8 329 68.7
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 4.3e-132 475.3 329 68.4
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 5.7e-132 474.9 329 68.4
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 9.7e-132 474.2 329 69.9
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.3e-131 473.8 324 68.5
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 2.8e-131 472.6 330 69.4
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 8.2e-131 471.1 328 70.4
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 1.1e-130 470.7 327 70.6
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.1e-130 468.8 328 67.1
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 1.5e-129 466.8 324 67.3
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 5.9e-129 464.9 329 68.7
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 1.0e-128 464.2 329 67.2
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 1.3e-128 463.8 328 67.1
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 2.2e-128 463.0 329 67.2
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.2e-128 463.0 328 68.9
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 3.8e-128 462.2 327 68.2
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 3.8e-128 462.2 329 66.3
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 5.0e-128 461.8 332 68.4
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 5.0e-128 461.8 329 66.3
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 5.0e-128 461.8 329 68.4
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 6.5e-128 461.5 328 67.4
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 8.5e-128 461.1 328 67.1
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 8.5e-128 461.1 329 66.6
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.1e-127 460.7 330 66.1
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 1.9e-127 459.9 328 66.2
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 2.5e-127 459.5 329 67.8
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 3.2e-127 459.1 328 67.7
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 4.2e-127 458.8 329 66.3
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 4.2e-127 458.8 328 68.3
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 4.2e-127 458.8 328 68.0
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 5.5e-127 458.4 329 66.6
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 5.5e-127 458.4 330 66.1
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 5.5e-127 458.4 329 67.5
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 7.2e-127 458.0 330 66.1
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 9.4e-127 457.6 328 68.6
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 2.1e-126 456.4 328 65.9
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 2.7e-126 456.1 328 65.5
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 3.6e-126 455.7 329 66.6
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 3.6e-126 455.7 329 65.7
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 4.6e-126 455.3 328 66.8
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 4.6e-126 455.3 329 65.3
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 4.6e-126 455.3 334 64.7
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 4.6e-126 455.3 329 67.2
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 6.1e-126 454.9 329 64.1
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 6.1e-126 454.9 328 64.9
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 7.9e-126 454.5 329 67.8
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 1.0e-125 454.1 326 67.5
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.8e-125 453.4 328 68.6
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 5.1e-125 451.8 329 66.9
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 5.1e-125 451.8 329 66.0
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 6.7e-125 451.4 329 66.6
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 6.7e-125 451.4 328 66.8
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.1e-124 450.7 328 66.5
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.1e-124 450.7 329 66.6
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 1.5e-124 450.3 329 65.7
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 1.5e-124 450.3 329 66.3
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 1.5e-124 450.3 329 65.7
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 2.5e-124 449.5 328 65.9
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 3.3e-124 449.1 336 65.2
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 4.3e-124 448.7 324 66.4
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 5.7e-124 448.4 329 66.6
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 9.7e-124 447.6 324 68.5
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 1.3e-123 447.2 328 66.2
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.7e-123 446.8 328 64.9
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 1.1e-122 444.1 330 64.5
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.8e-122 443.4 329 66.6
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 3.1e-122 442.6 328 66.2
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 9.1e-122 441.0 329 63.2
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 1.5e-121 440.3 330 64.2
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 3.4e-121 439.1 329 63.8
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 5.9e-121 438.3 332 63.3
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 5.9e-121 438.3 328 64.3
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 7.7e-121 438.0 330 63.6
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 1.0e-120 437.6 329 63.8
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 6.5e-120 434.9 329 64.4
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 3.2e-119 432.6 329 62.6
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 7.2e-119 431.4 330 63.6
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.2e-118 430.6 336 64.6
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 1.2e-118 430.6 333 64.9
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 3.6e-118 429.1 324 62.0
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 3.9e-117 425.6 326 62.9
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 5.1e-117 425.2 299 67.2
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 5.1e-117 425.2 333 61.6
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 6.7e-117 424.9 317 64.7
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 8.8e-117 424.5 344 59.9
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 4.4e-116 422.2 330 62.7
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 5.7e-116 421.8 329 65.0
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 1.3e-115 420.6 331 61.3
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 6.3e-115 418.3 328 61.6
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 6.3e-115 418.3 326 62.3
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 8.2e-115 417.9 329 60.5
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 3.1e-114 416.0 329 62.0
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 5.3e-114 415.2 329 62.0
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.1e-111 407.5 329 61.1
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 1.5e-111 407.1 324 60.8
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 1.5e-111 407.1 319 62.7
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 4.7e-110 402.1 328 59.8
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 6.1e-110 401.7 324 59.6
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 1.4e-109 400.6 330 59.1
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 2.3e-109 399.8 329 59.6
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 6.7e-109 398.3 330 59.1
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 2.6e-108 396.4 330 59.4
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 1.7e-107 393.7 335 59.7
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 3.1e-106 389.4 289 64.0
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 4.1e-106 389.0 333 58.9
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 1.7e-104 383.6 329 57.4
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 5.0e-104 382.1 318 59.4
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 2.7e-102 376.3 289 64.0
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 3.6e-102 375.9 306 61.8
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.0e-100 370.2 329 55.9
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 4.4e-100 369.0 377 51.7
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 4.8e-99 365.5 248 69.0
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 5.2e-93 345.5 258 66.3
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 5.4e-90 335.5 339 52.8
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.0e-88 331.3 337 51.3
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.3e-83 314.3 373 45.8
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 1.6e-81 307.4 336 48.5
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.0e-80 304.7 266 56.8
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 5.8e-76 288.9 217 67.3
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 2.9e-75 286.6 330 47.9
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 8.3e-75 285.0 273 54.6
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 6.0e-73 278.9 209 65.6
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 6.6e-72 275.4 306 48.4
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 9.8e-68 261.5 401 38.7
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 4.9e-67 259.2 179 68.2
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 5.8e-60 235.7 250 49.6
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 6.4e-59 232.3 190 56.8
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 5.8e-52 209.1 364 36.3
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 9.9e-52 208.4 186 53.2
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 5.1e-48 196.1 143 65.0
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 2.0e-44 184.1 246 43.9
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 2.6e-44 183.7 147 60.5
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 6.4e-43 179.1 153 55.6
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 5.4e-42 176.0 138 58.7
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 5.4e-42 176.0 138 58.7
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 2.1e-38 164.1 122 63.1
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 1.8e-37 161.0 327 32.7
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 4.6e-25 119.8 290 31.4
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 1.9e-23 114.4 152 41.4
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 3.7e-22 110.2 109 51.4
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 4.8e-22 109.8 91 59.3
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 6.9e-21 105.9 89 57.3
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 3.8e-19 100.1 75 58.7
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.4e-13 80.9 38 89.5
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 2.6e-12 77.4 69 50.7
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 5.5e-10 69.7 69 47.8
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.0e-07 61.2 51 62.7
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 6.3e-06 56.2 38 57.9


User provided reference genes

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