Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 1.5e-164 582.8 296 100.0
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 3.5e-137 491.9 296 83.8
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 1.3e-112 410.2 296 70.3
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.8e-109 399.8 296 67.6
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.8e-109 399.8 296 67.6
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 5.2e-109 398.3 296 68.2
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 5.2e-109 398.3 295 67.1
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 7.5e-108 394.4 296 67.2
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 2.9e-107 392.5 296 66.9
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.4e-106 390.2 296 66.2
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.4e-106 389.4 296 66.2
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 2.4e-106 389.4 296 66.2
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 5.4e-106 388.3 296 65.5
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 5.1e-104 381.7 296 67.2
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 5.1e-104 381.7 296 65.5
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 5.1e-104 381.7 287 67.9
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 1.1e-103 380.6 296 64.2
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 2.5e-103 379.4 296 64.9
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 5.6e-103 378.3 296 65.2
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 7.3e-103 377.9 298 66.1
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 7.3e-103 377.9 296 65.5
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 9.5e-103 377.5 296 64.9
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 9.5e-103 377.5 296 64.9
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 4.7e-102 375.2 296 64.2
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 6.2e-102 374.8 296 63.2
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 6.2e-102 374.8 293 66.6
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 8.1e-102 374.4 298 64.8
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 1.1e-101 374.0 296 63.2
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 1.1e-101 374.0 299 64.5
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 1.1e-101 374.0 297 62.3
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 2.3e-101 372.9 296 64.9
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 3.1e-101 372.5 296 63.5
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 4.0e-101 372.1 296 62.2
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 4.0e-101 372.1 296 62.2
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 4.0e-101 372.1 296 64.5
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 5.2e-101 371.7 297 64.6
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 8.9e-101 370.9 297 63.6
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 8.9e-101 370.9 296 62.5
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 1.2e-100 370.5 296 62.5
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 2.0e-100 369.8 297 63.3
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.4e-100 369.0 295 63.1
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 1.7e-99 366.7 297 62.6
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.2e-99 366.3 296 63.5
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 2.2e-99 366.3 296 62.2
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 2.2e-99 366.3 298 61.1
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.9e-99 365.9 297 63.0
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 8.4e-99 364.4 296 61.5
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 8.4e-99 364.4 353 55.8
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.4e-98 363.6 294 63.9
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 2.4e-98 362.8 296 61.8
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 3.2e-98 362.5 296 62.2
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 4.1e-98 362.1 326 57.1
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 4.1e-98 362.1 297 62.6
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 5.4e-98 361.7 294 62.9
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 7.1e-98 361.3 297 62.0
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 7.1e-98 361.3 296 63.5
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 9.2e-98 360.9 296 60.5
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 1.2e-97 360.5 318 59.7
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.6e-97 360.1 297 61.6
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.6e-97 360.1 322 60.9
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 1.6e-97 360.1 293 62.8
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 2.7e-97 359.4 296 61.8
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 3.5e-97 359.0 296 61.5
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 3.5e-97 359.0 296 63.2
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 4.6e-97 358.6 296 61.5
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 6.0e-97 358.2 296 61.5
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 7.8e-97 357.8 295 61.7
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 1.7e-96 356.7 296 61.1
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 3.9e-96 355.5 296 61.5
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 5.1e-96 355.1 298 62.4
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 8.6e-96 354.4 296 61.1
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 8.6e-96 354.4 296 60.8
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.1e-95 354.0 297 61.6
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.5e-95 353.6 294 60.5
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.9e-95 353.2 295 61.7
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 3.3e-95 352.4 296 59.1
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 4.3e-95 352.1 323 57.9
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.1e-94 349.7 296 60.1
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 2.1e-94 349.7 297 60.6
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 2.8e-94 349.4 308 59.7
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 2.8e-94 349.4 308 59.7
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 8.1e-94 347.8 298 61.1
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 3.1e-93 345.9 308 59.1
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.5e-92 343.6 296 59.1
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 9.9e-92 340.9 298 58.7
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 9.9e-92 340.9 331 55.9
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.4e-90 337.0 301 59.5
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.9e-90 336.7 295 57.6
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 3.2e-90 335.9 330 54.5
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 9.3e-90 334.3 298 57.7
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.6e-89 333.6 306 56.9
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 2.1e-89 333.2 298 57.7
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 3.5e-89 332.4 298 57.7
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 3.5e-89 332.4 298 57.0
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 1.0e-88 330.9 307 57.3
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 6.6e-88 328.2 298 57.0
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 6.6e-88 328.2 287 61.7
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 1.9e-87 326.6 298 57.4
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 1.9e-87 326.6 272 61.8
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 5.6e-87 325.1 302 57.6
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 5.3e-85 318.5 239 66.1
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 2.0e-84 316.6 296 55.7
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 9.9e-84 314.3 343 51.9
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 1.7e-83 313.5 293 57.3
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.7e-83 313.5 296 55.4
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 4.9e-83 312.0 296 55.7
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 6.4e-83 311.6 294 57.1
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.1e-81 306.6 251 60.2
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 2.3e-80 303.1 239 63.6
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 3.0e-80 302.8 297 53.9
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 2.5e-79 299.7 302 54.0
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 2.1e-78 296.6 297 53.2
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 3.6e-78 295.8 297 55.9
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.2e-76 290.8 240 60.8
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 5.8e-76 288.5 278 55.8
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 2.9e-75 286.2 307 50.8
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 1.6e-73 280.4 316 49.7
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 1.3e-72 277.3 208 66.3
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 4.8e-70 268.9 296 49.7
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 8.1e-70 268.1 299 49.8
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 8.1e-70 268.1 297 51.9
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 2.4e-69 266.5 209 63.6
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 5.3e-69 265.4 296 50.0
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 6.5e-67 258.5 277 50.2
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 2.5e-66 256.5 255 53.3
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 7.1e-66 255.0 283 52.3
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 7.1e-66 255.0 251 54.2
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.1e-63 247.7 298 47.3
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 5.7e-63 245.4 297 47.1
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 9.0e-61 238.0 330 44.8
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.0e-60 236.9 218 60.1
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 2.6e-60 236.5 230 51.3
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 4.5e-60 235.7 210 61.4
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 4.5e-60 235.7 371 39.9
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 7.6e-60 235.0 208 58.7
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.9e-58 230.3 209 57.4
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 1.9e-58 230.3 292 46.9
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 3.2e-58 229.6 290 45.9
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 2.5e-55 219.9 208 55.3
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 1.6e-54 217.2 337 40.4
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 1.8e-53 213.8 322 38.8
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.0e-51 208.0 200 55.0
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 1.2e-44 184.5 171 56.7
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.6e-41 172.9 340 35.0
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 5.3e-37 159.1 125 62.4
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 9.1e-37 158.3 90 84.4
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 2.8e-30 136.7 319 32.6
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 4.8e-30 136.0 106 66.0
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 3.8e-27 126.3 79 72.2
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 1.9e-18 97.4 60 75.0
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 8.0e-17 92.0 79 62.0
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 3.4e-15 86.7 127 43.3
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 1.7e-14 84.3 149 40.3
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 4.1e-13 79.7 102 47.1
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 2.0e-12 77.4 142 38.7
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 3.5e-12 76.6 326 26.1
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 4.5e-12 76.3 64 64.1
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 3.0e-08 63.5 42 64.3
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.5e-07 61.2 38 65.8


User provided reference genes

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