Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 2267.7 1159 100.0
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1916.0 1170 82.6
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1879.0 1169 82.0
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1874.4 1166 81.5
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1869.4 1162 81.4
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1853.2 1167 80.4
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1852.4 1167 80.4
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1852.4 1159 80.9
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1851.3 1167 80.3
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1848.2 1166 80.4
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1846.6 1211 77.6
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1844.7 1166 80.2
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1842.8 1167 79.9
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1841.6 1101 83.7
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1838.5 1167 79.9
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1828.1 1169 79.8
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1810.0 1159 78.1
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1808.5 1174 78.1
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1808.1 1174 78.3
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1803.9 1174 77.6
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1803.1 1168 77.5
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1799.3 1159 77.3
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1797.7 1161 77.8
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1797.3 1175 78.0
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1796.6 1166 77.4
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1796.2 1167 77.5
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1791.9 1168 77.4
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1791.9 1175 77.5
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1790.8 1163 77.8
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1790.8 1161 77.2
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1789.2 1092 81.8
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1788.9 1166 77.8
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1786.9 1168 77.3
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1786.5 1162 77.0
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1786.5 1160 77.0
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1785.4 1160 76.8
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1784.2 1165 77.2
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1783.8 1168 77.7
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1783.1 1162 77.0
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1782.7 1172 77.1
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1782.3 1166 77.7
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1781.1 1160 76.8
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1778.8 1204 75.2
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1778.1 1178 76.7
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1776.5 1163 77.6
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1776.1 1166 78.6
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1776.1 1166 77.3
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1776.1 1207 75.6
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1771.5 1160 76.2
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1767.3 1167 76.9
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1766.1 1171 75.5
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1764.2 1166 77.0
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1762.7 1175 75.9
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1761.5 1165 76.7
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1761.1 1165 75.9
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1760.7 1170 76.4
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1759.6 1165 76.7
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1759.6 1169 76.0
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1756.9 1175 74.5
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1756.1 1172 76.1
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1756.1 1172 76.1
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1754.6 1172 75.9
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1751.1 1169 76.2
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1751.1 1171 75.7
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1749.6 1175 74.4
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1749.2 1169 76.3
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1748.8 1167 76.2
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1747.6 1176 75.6
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1745.7 1196 75.2
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1745.7 1163 76.1
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1745.7 1171 76.4
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1739.9 1175 74.9
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1722.2 1174 74.5
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1721.1 1178 74.3
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1716.8 1151 76.0
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1716.0 1172 74.3
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1715.7 1172 74.1
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1714.5 1180 74.1
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1713.4 1168 74.1
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1713.0 1170 75.0
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1713.0 1180 73.9
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1710.3 1171 73.9
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1710.3 1171 73.9
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1710.3 1173 73.9
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1707.6 1168 74.0
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1699.5 1190 72.9
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1691.0 1179 74.0
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1689.5 1099 76.5
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1686.4 1325 68.0
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1678.3 1173 73.5
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1649.0 1169 71.3
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1627.8 1194 71.4
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1602.0 1158 70.7
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1602.0 1076 75.5
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1587.8 1164 69.7
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1556.6 1160 66.7
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1543.9 1161 67.0
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1537.3 995 77.9
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1444.1 1152 67.1
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1440.2 936 77.0
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1392.1 1158 61.0
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1357.4 1159 60.1
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1343.2 1153 60.7
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1336.6 1160 59.7
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1336.2 848 79.2
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1327.8 1171 58.7
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1286.9 839 76.9
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1259.6 799 79.1
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1220.3 798 76.2
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1175.6 783 74.5
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1077.8 696 80.2
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 3.3e-308 1062.0 914 59.6
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 3.0e-293 1012.3 1182 45.8
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 2.1e-278 963.0 648 73.6
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 1.8e-269 933.3 577 83.2
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 6.7e-261 904.8 744 65.1
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.1e-258 897.5 599 78.1
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 8.8e-253 877.9 597 73.4
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.6e-249 867.1 546 81.7
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 2.6e-236 823.2 627 67.6
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 6.3e-235 818.5 520 75.2
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 2.9e-219 766.5 476 79.6
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 1.7e-208 730.7 465 76.3
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 1.6e-193 681.0 447 76.3
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 5.2e-136 490.0 355 70.7
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 2.8e-134 484.2 358 70.1
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 1.4e-109 402.1 270 74.1
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 6.8e-104 383.3 378 53.2
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 2.8e-81 308.1 195 77.9
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 1.8e-51 209.1 167 66.5
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 8.7e-43 180.3 144 69.4
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.8e-41 175.3 117 80.3
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 2.6e-34 152.1 78 91.0
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 3.3e-34 151.8 102 80.4
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 5.7e-34 151.0 87 82.8
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 2.8e-33 148.7 108 75.0
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 7.7e-31 140.6 96 78.1
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 4.5e-15 88.2 131 38.9
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 3.8e-14 85.1 131 38.2
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 1.1e-13 83.6 96 51.0
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 8.0e-12 77.4 91 52.7
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 1.3e-09 70.1 51 66.7
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 4.8e-09 68.2 51 64.7
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.8e-08 66.2 51 62.7
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 5.0e-06 58.2 334 23.7


User provided reference genes

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