Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 2.0e-280 968.4 464 100.0
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 3.5e-229 798.1 428 87.9
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 3.0e-228 795.0 428 87.9
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 8.7e-228 793.5 428 86.9
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.1e-225 786.6 428 86.9
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 9.0e-225 783.5 428 86.9
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.4e-224 781.6 428 85.7
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 4.5e-224 781.2 428 85.5
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.3e-223 779.6 428 84.8
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 5.0e-223 777.7 428 86.2
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 5.0e-223 777.7 485 78.1
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 8.5e-223 776.9 427 85.5
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.9e-222 775.8 428 85.5
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 2.5e-222 775.4 427 85.2
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 2.5e-222 775.4 427 85.0
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 5.5e-222 774.2 428 85.3
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 4.6e-221 771.2 428 84.3
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 6.1e-221 770.8 434 84.1
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.0e-220 770.0 427 84.8
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.0e-220 768.5 428 84.1
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 6.7e-220 767.3 427 84.1
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 6.7e-220 767.3 442 82.8
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 8.8e-220 766.9 428 83.6
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 2.0e-219 765.8 426 84.3
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 2.5e-219 765.4 437 82.2
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 3.3e-219 765.0 428 83.9
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 4.3e-219 764.6 427 84.1
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 5.7e-219 764.2 428 83.2
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 9.7e-219 763.5 426 84.3
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 9.7e-219 763.5 426 84.3
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 9.7e-219 763.5 428 83.4
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 1.3e-218 763.1 426 84.3
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.3e-218 763.1 426 84.5
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 3.7e-218 761.5 426 84.0
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 3.7e-218 761.5 426 84.0
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 3.7e-218 761.5 428 84.3
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 4.8e-218 761.1 426 83.6
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 6.3e-218 760.8 428 82.9
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 8.2e-218 760.4 428 83.9
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 1.4e-217 759.6 428 82.9
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 4.1e-217 758.1 427 84.5
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 4.1e-217 758.1 514 73.9
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 5.3e-217 757.7 428 83.9
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 6.9e-217 757.3 426 83.3
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 9.1e-217 756.9 428 83.2
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 9.1e-217 756.9 499 74.5
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 1.2e-216 756.5 428 82.7
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 1.5e-216 756.1 428 82.9
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 1.5e-216 756.1 428 82.5
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 2.0e-216 755.7 428 82.5
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 2.0e-216 755.7 426 83.6
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 3.4e-216 755.0 426 83.3
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 3.4e-216 755.0 426 82.9
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 7.7e-216 753.8 428 82.9
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 1.0e-215 753.4 428 82.5
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 1.3e-215 753.1 441 81.4
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.3e-215 753.1 428 82.2
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.7e-215 752.7 428 82.0
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 3.8e-215 751.5 428 82.0
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 1.1e-214 750.0 428 82.2
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 3.2e-214 748.4 428 82.0
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 5.5e-214 747.7 428 81.8
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 5.5e-214 747.7 428 82.0
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 5.5e-214 747.7 428 81.3
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 9.4e-214 746.9 437 81.5
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.6e-213 746.1 427 82.0
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.6e-213 746.1 427 82.0
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.6e-213 746.1 428 81.8
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.0e-212 743.4 428 81.3
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.0e-212 743.4 466 76.6
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.4e-212 743.0 428 81.5
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.9e-212 741.5 428 81.3
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 8.8e-212 740.3 432 80.1
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 7.4e-211 737.3 428 79.9
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 1.7e-210 736.1 428 80.1
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 2.2e-210 735.7 428 82.2
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 3.7e-210 734.9 428 80.6
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.1e-209 733.4 428 80.4
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 1.8e-209 732.6 428 80.4
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.8e-209 732.6 428 80.4
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 2.4e-209 732.3 428 79.9
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 5.3e-209 731.1 428 79.4
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 4.7e-205 718.0 428 77.6
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 8.8e-204 713.8 409 83.1
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 9.7e-203 710.3 403 83.9
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 4.8e-202 708.0 427 77.5
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 6.3e-202 707.6 428 76.9
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 9.1e-201 703.7 427 76.8
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 3.5e-200 701.8 428 77.1
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 2.2e-199 699.1 396 83.1
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 2.2e-199 699.1 395 82.8
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 6.1e-197 691.0 382 86.1
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.0e-196 688.7 436 75.5
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 5.2e-196 688.0 399 81.2
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.4e-193 679.1 428 75.5
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 9.1e-193 677.2 427 75.2
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 8.5e-191 670.6 428 73.4
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.9e-190 669.5 430 73.0
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.8e-188 662.9 426 73.5
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.2e-187 660.2 432 71.1
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 9.8e-187 657.1 427 72.1
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 1.4e-185 653.3 428 70.3
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.2e-181 640.2 428 69.2
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 2.6e-179 632.5 341 87.4
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 7.5e-179 630.9 428 72.9
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 1.3e-178 630.2 330 89.4
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.1e-177 627.1 427 69.8
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 1.4e-177 626.7 331 89.1
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 7.8e-176 620.9 434 66.8
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.1e-172 609.0 427 67.0
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 5.2e-172 608.2 339 84.4
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 3.9e-167 592.0 355 79.7
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.1e-166 590.5 436 63.3
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 9.5e-166 587.4 379 74.7
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.5e-163 580.1 432 63.7
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 5.8e-163 578.2 426 68.5
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.4e-161 573.5 436 62.2
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 3.2e-161 572.4 426 62.4
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.5e-158 563.5 431 62.9
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 5.8e-147 525.0 334 73.4
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.8e-146 522.3 344 72.1
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 3.2e-145 519.2 284 84.5
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.9e-142 510.0 427 58.3
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.9e-137 493.4 381 65.9
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.3e-130 470.7 432 53.0
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 6.7e-111 405.2 218 87.6
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 6.9e-108 395.2 352 58.5
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.4e-105 387.5 235 77.9
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 8.0e-88 328.6 228 68.9
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.7e-78 295.8 157 90.4
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 1.1e-76 291.6 181 74.6
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 7.2e-73 278.9 176 73.3
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 2.7e-67 260.4 145 84.8
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 3.5e-67 260.0 197 67.5
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.3e-58 231.5 221 56.6
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.0e-58 230.3 134 82.1
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 7.3e-49 199.1 113 80.5
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.8e-47 194.5 107 79.4
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 1.6e-40 171.4 136 64.7
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.8e-39 167.9 88 90.9
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.7e-34 151.4 93 77.4
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.2e-32 145.2 165 48.5
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.1e-31 142.1 82 82.9
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 9.9e-30 135.6 204 39.2
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.4e-23 114.4 72 73.6
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.5e-22 111.7 242 33.9
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 5.8e-22 109.8 65 70.8
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 2.2e-21 107.8 63 82.5
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 6.4e-21 106.3 67 67.2
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 5.4e-20 103.2 57 75.4
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 3.1e-15 87.4 118 44.1
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 5.8e-14 83.2 96 51.0
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 2.9e-13 80.9 38 86.8
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 2.3e-10 71.2 47 68.1
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 2.5e-09 67.8 36 77.8
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 1.1e-07 62.4 69 52.2
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 1.4e-07 62.0 35 77.1


User provided reference genes

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