Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20254 Utricularia gibba HOM05D001622 ORTHO05D007320 1.6e-67 259.2 127 100.0
SalBow1G8023 Salvia bowleyana HOM05D001622 ORTHO05D007320 1.2e-51 206.5 123 78.9
MSTRG.15021 Avicennia marina HOM05D001622 ORTHO05D007320 2.6e-49 198.7 123 74.8
Dinv19618 Davidia involucrata HOM05D001622 ORTHO05D007320 7.6e-49 197.2 123 74.8
Atru.chr2.1758 Acer truncatum HOM05D001622 ORTHO05D007320 1.7e-48 196.1 123 70.7
Oeu052005.1 Olea europaea HOM05D001622 ORTHO05D007320 2.9e-48 195.3 122 75.4
PGSC0003DMG400022235 Solanum tuberosum HOM05D001622 ORTHO05D007320 3.2e-47 191.8 123 74.8
Peaxi162Scf00452g00834 Petunia axillaris HOM05D001622 ORTHO05D007320 5.4e-47 191.0 123 74.0
Sopen07g034630 Solanum pennellii HOM05D001622 ORTHO05D007320 9.3e-47 190.3 123 74.0
Solyc07g066450.4 Solanum lycopersicum HOM05D001622 ORTHO05D007320 1.2e-46 189.9 123 74.0
Ciclev10019785m.g Citrus clementina HOM05D001622 ORTHO05D007320 1.6e-46 189.5 123 68.3
Migut.H01694 Erythranthe guttata HOM05D001622 ORTHO05D007320 2.7e-46 188.7 124 74.2
CSS0015787 Camellia sinensis var. sinensis HOM05D001622 ORTHO05D007320 3.5e-46 188.3 121 71.9
CSS0023682 Camellia sinensis var. sinensis HOM05D001622 ORTHO05D007320 3.5e-46 188.3 121 71.9
Nitab4.5_0001080g0040 Nicotiana tabacum HOM05D001622 ORTHO05D007320 4.6e-46 188.0 123 72.4
Cc05_g16070 Coffea canephora HOM05D001622 ORTHO05D007320 6.0e-46 187.6 124 73.4
AUR62043219 Chenopodium quinoa HOM05D001622 ORTHO05D007320 7.8e-46 187.2 121 69.4
SGA_v2.0_scaffold713G53504 Striga asiatica HOM05D001622 ORTHO05D007320 1.7e-45 186.0 124 70.2
CiPaw.12G005900 Carya illinoinensis HOM05D001622 ORTHO05D007320 3.9e-45 184.9 123 69.1
Dinv42510 Davidia involucrata HOM05D001622 ORTHO05D007320 3.9e-45 184.9 121 71.9
Lsat_1_v5_gn_7_112141 Lactuca sativa HOM05D001622 ORTHO05D007320 3.9e-45 184.9 123 69.1
QL04p073268 Quercus lobata HOM05D001622 ORTHO05D007320 3.9e-45 184.9 123 68.3
CANSAT80G1626 Cannabis sativa HOM05D001622 ORTHO05D007320 6.6e-45 184.1 121 69.4
AUR62043840 Chenopodium quinoa HOM05D001622 ORTHO05D007320 6.6e-45 184.1 121 67.8
EL10Ac8g20403 Beta vulgaris HOM05D001622 ORTHO05D007320 8.7e-45 183.7 121 67.8
CAN.G943.38 Capsicum annuum HOM05D001622 ORTHO05D007320 8.7e-45 183.7 121 72.7
Actinidia31526 Actinidia chinensis HOM05D001622 ORTHO05D007320 1.5e-44 183.0 123 68.3
THA.LOC104815713 Tarenaya hassleriana HOM05D001622 ORTHO05D007320 1.9e-44 182.6 123 66.7
Thecc.07G152600 Theobroma cacao HOM05D001622 ORTHO05D007320 1.9e-44 182.6 123 68.3
Duzib187G0458 Durio zibethinus HOM05D001622 ORTHO05D007320 2.5e-44 182.2 123 69.1
Rhsim06G0238900 Rhododendron simsii HOM05D001622 ORTHO05D007320 2.1e-43 179.1 123 69.1
Potri.011G143000 Populus trichocarpa HOM05D001622 ORTHO05D007320 2.8e-43 178.7 123 67.5
Sabra11G0127900 Salix brachista HOM05D001622 ORTHO05D007320 2.8e-43 178.7 123 67.5
MD10G1202600 Malus domestica HOM05D001622 ORTHO05D007320 4.8e-43 177.9 123 67.5
DCAR_009640 Daucus carota HOM05D001622 ORTHO05D007320 6.2e-43 177.6 123 66.7
Sc20g0002900 Simmondsia chinensis HOM05D001622 ORTHO05D007320 6.2e-43 177.6 123 66.7
Lalb_Chr03g0031801 Lupinus albus HOM05D001622 ORTHO05D007320 8.1e-43 177.2 123 67.5
Glyma.08G172100 Glycine max HOM05D001622 ORTHO05D007320 1.1e-42 176.8 123 65.0
Prupe.4G139600 Prunus persica HOM05D001622 ORTHO05D007320 1.1e-42 176.8 123 67.5
arahy.Tifrunner.gnm1.ann1.5TU0IR Arachis hypogaea HOM05D001622 ORTHO05D007320 1.4e-42 176.4 123 65.9
arahy.Tifrunner.gnm1.ann1.WY48MC Arachis hypogaea HOM05D001622 ORTHO05D007320 1.4e-42 176.4 123 65.9
PGR083G0039 Punica granatum HOM05D001622 ORTHO05D007320 1.4e-42 176.4 123 69.1
Duzib268G0553 Durio zibethinus HOM05D001622 ORTHO05D007320 1.8e-42 176.0 121 66.9
Manes.06G171900 Manihot esculenta HOM05D001622 ORTHO05D007320 2.4e-42 175.6 125 67.2
GSVIVG01020422001 Vitis vinifera HOM05D001622 ORTHO05D007320 2.4e-42 175.6 123 66.7
MD05G1230900 Malus domestica HOM05D001622 ORTHO05D007320 3.1e-42 175.3 121 67.8
vmacro11664 Vaccinium macrocarpon HOM05D001622 ORTHO05D007320 3.1e-42 175.3 123 67.5
Carub.0005s0925 Capsella rubella HOM05D001622 ORTHO05D007320 4.0e-42 174.9 124 66.1
Eucgr.F01456 Eucalyptus grandis HOM05D001622 ORTHO05D007320 4.0e-42 174.9 123 65.0
Gorai.007G335700 Gossypium raimondii HOM05D001622 ORTHO05D007320 4.0e-42 174.9 123 65.9
Gorai.007G335900 Gossypium raimondii HOM05D001622 ORTHO05D007320 4.0e-42 174.9 123 65.0
Sp3g11080 Schrenkiella parvula HOM05D001622 ORTHO05D007320 5.3e-42 174.5 124 65.3
Gohir.A01G039300 Gossypium hirsutum HOM05D001622 ORTHO05D007320 6.9e-42 174.1 121 63.6
Gohir.D01G027000 Gossypium hirsutum HOM05D001622 ORTHO05D007320 6.9e-42 174.1 121 63.6
Gorai.002G036400 Gossypium raimondii HOM05D001622 ORTHO05D007320 6.9e-42 174.1 121 63.6
Lj4A318T19 Lonicera japonica HOM05D001622 ORTHO05D007320 6.9e-42 174.1 125 66.4
Aa31LG8G160 Aethionema arabicum HOM05D001622 ORTHO05D007320 9.0e-42 173.7 123 64.2
Lj3g0000732 Lotus japonicus HOM05D001622 ORTHO05D007320 1.2e-41 173.3 123 64.2
VMungo1080G0392 Vigna mungo HOM05D001622 ORTHO05D007320 1.2e-41 173.3 123 63.4
Haze_08538 Corylus avellana HOM05D001622 ORTHO05D007320 1.5e-41 172.9 123 65.0
TAR627G1186 Trochodendron aralioides HOM05D001622 ORTHO05D007320 1.5e-41 172.9 123 64.2
AT3G12940 Arabidopsis thaliana HOM05D001622 ORTHO05D007320 2.0e-41 172.6 124 63.7
Thhalv10022429m.g Eutrema salsugineum HOM05D001622 ORTHO05D007320 2.6e-41 172.2 124 64.5
FvH4_3g15740 Fragaria vesca HOM05D001622 ORTHO05D007320 3.4e-41 171.8 123 65.0
FAN11G1576 Fragaria x ananassa HOM05D001622 ORTHO05D007320 3.4e-41 171.8 123 65.0
FAN21G2787 Fragaria x ananassa HOM05D001622 ORTHO05D007320 3.4e-41 171.8 123 65.0
Phvul.005G057000 Phaseolus vulgaris HOM05D001622 ORTHO05D007320 3.4e-41 171.8 122 63.9
RcHm_v2.0_Chr5g0026521 Rosa chinensis HOM05D001622 ORTHO05D007320 3.4e-41 171.8 123 65.0
Gohir.D11G300700 Gossypium hirsutum HOM05D001622 ORTHO05D007320 4.5e-41 171.4 123 64.2
CsaV3_4G031890 Cucumis sativus L. HOM05D001622 ORTHO05D007320 7.6e-41 170.6 123 64.2
ECA236G5124 Erigeron canadensis HOM05D001622 ORTHO05D007320 7.6e-41 170.6 123 65.9
TWI38G0191 Tripterygium wilfordii HOM05D001622 ORTHO05D007320 7.6e-41 170.6 123 64.2
AL3G24620 Arabidopsis lyrata HOM05D001622 ORTHO05D007320 1.7e-40 169.5 124 63.7
ClCG11G016450 Citrullus lanatus HOM05D001622 ORTHO05D007320 1.7e-40 169.5 123 63.4
Aqoxy3G00134 Aquilegia oxysepala HOM05D001622 ORTHO05D007320 2.9e-40 168.7 123 64.2
FAN16G1111 Fragaria x ananassa HOM05D001622 ORTHO05D007320 2.9e-40 168.7 123 64.2
Medtr2g069480 Medicago truncatula HOM05D001622 ORTHO05D007320 2.9e-40 168.7 123 61.8
Psat1g011120 Pisum sativum HOM05D001622 ORTHO05D007320 3.8e-40 168.3 123 61.0
CARHR087460 Cardamine hirsuta HOM05D001622 ORTHO05D007320 4.9e-40 167.9 124 62.9
MELO3C026966.2 Cucumis melo HOM05D001622 ORTHO05D007320 6.4e-40 167.5 123 62.6
HanXRQChr06g0183061 Helianthus annuus HOM05D001622 ORTHO05D007320 1.1e-39 166.8 123 66.7
Manes.14G016300 Manihot esculenta HOM05D001622 ORTHO05D007320 1.9e-39 166.0 125 63.2
BcaC05g29222 Brassica carinata HOM05D001622 ORTHO05D007320 5.4e-39 164.5 116 68.1
C05p54970 Brassica napus HOM05D001622 ORTHO05D007320 5.4e-39 164.5 116 68.1
TPR.G9747 Trifolium pratense HOM05D001622 ORTHO05D007320 5.4e-39 164.5 124 59.7
CDE05G2624 Ceratophyllum demersum HOM05D001622 ORTHO05D007320 7.1e-39 164.1 123 63.4
Ca_27849_v3 Cicer arietinum L. HOM05D001622 ORTHO05D007320 9.3e-39 163.7 127 60.6
BolC5t34166H Brassica oleracea HOM05D001622 ORTHO05D007320 1.6e-38 162.9 116 67.2
Sed0028189 Sechium edule HOM05D001622 ORTHO05D007320 2.3e-37 159.1 123 60.2
BraA05t22455Z Brassica rapa HOM05D001622 ORTHO05D007320 5.1e-37 157.9 116 64.7
Sed0026267 Sechium edule HOM05D001622 ORTHO05D007320 5.1e-37 157.9 123 59.3
A05p36550 Brassica napus HOM05D001622 ORTHO05D007320 1.1e-36 156.8 116 63.8
PSO675G6286 Papaver somniferum HOM05D001622 ORTHO05D007320 1.5e-36 156.4 113 64.6
CAN.G337.144 Capsicum annuum HOM05D001622 ORTHO05D007320 1.9e-36 156.0 113 70.8
BcaB06g25498 Brassica carinata HOM05D001622 ORTHO05D007320 5.6e-36 154.5 119 60.5
ATR0763G216 Amborella trichopoda HOM05D001622 ORTHO05D007320 2.1e-35 152.5 123 59.3
HPP92_001849 Vanilla planifolia HOM05D001622 ORTHO05D007320 3.1e-34 148.7 123 56.9
Zm00001eb105490 Zea mays HOM05D001622 ORTHO05D007320 1.2e-33 146.7 122 57.4
SHI21454 Sapria himalayana HOM05D001622 ORTHO05D007320 2.6e-33 145.6 123 57.7
Os07g0496900 Oryza sativa ssp. japonica HOM05D001622 ORTHO05D007320 1.0e-29 133.7 126 50.8
Pp3c2_6360 Physcomitrium patens HOM05D001622 ORTHO05D007320 8.2e-27 124.0 123 48.8
Pp3c1_30960 Physcomitrium patens HOM05D001622 ORTHO05D007320 4.5e-25 118.2 123 45.5
vmacro13700 Vaccinium macrocarpon HOM05D001622 ORTHO05D007320 7.6e-25 117.5 100 59.0
Pp3c10_7420 Physcomitrium patens HOM05D001622 ORTHO05D007320 1.3e-24 116.7 115 50.4
Pp3c14_8770 Physcomitrium patens HOM05D001622 ORTHO05D007320 1.3e-24 116.7 123 47.2
Mapoly0052s0101 Marchantia polymorpha HOM05D001622 ORTHO05D007320 1.1e-23 113.6 123 42.3
RcHm_v2.0_Chr5g0026471 Rosa chinensis HOM05D001622 ORTHO05D007320 2.5e-23 112.5 84 69.0
SMO165G0122 Selaginella moellendorffii HOM05D001622 ORTHO05D007320 6.0e-22 107.8 106 46.2
Duzib268G1161 Durio zibethinus HOM05D001622 ORTHO05D007320 2.3e-21 105.9 75 57.3
AagrBONN_evm.TU.Sc2ySwM_369.297 Anthoceros agrestis HOM05D001622 ORTHO05D007320 1.1e-20 103.6 118 39.0
Glyma.15G255600 Glycine max HOM05D001622 ORTHO05D007320 2.8e-19 99.0 78 61.5
vmacro07870 Vaccinium macrocarpon HOM05D001622 ORTHO05D007320 4.8e-19 98.2 122 49.2
Mapoly0105s0037 Marchantia polymorpha HOM05D002225 ORTHO05D002271 2.1e-14 82.8 122 36.9
MD00G1150800 Malus domestica HOM05D001622 ORTHO05D007320 3.9e-13 78.6 51 80.4
MD05G1231200 Malus domestica HOM05D001622 ORTHO05D007320 3.9e-13 78.6 51 80.4
Pp3c2_29300 Physcomitrium patens HOM05D002225 ORTHO05D002271 1.9e-12 76.3 121 38.8
Actinidia07351 Actinidia chinensis HOM05D001622 ORTHO05D007320 5.7e-12 74.7 73 57.5
Zm00001eb321950 Zea mays HOM05D001622 ORTHO05D007320 4.8e-11 71.6 57 66.7
Cpa.g.sc10.48 Carica papaya HOM05D001622 ORTHO05D007320 1.4e-10 70.1 44 56.8
Pp3c7_24270 Physcomitrium patens HOM05D002225 ORTHO05D002271 4.1e-10 68.6 119 37.8
AagrBONN_evm.TU.Sc2ySwM_368.1356 Anthoceros agrestis HOM05D002225 ORTHO05D002271 5.3e-10 68.2 115 37.4
Pp3c11_2010 Physcomitrium patens HOM05D002225 ORTHO05D002271 6.9e-10 67.8 119 37.0
Carub.0003s1979 Capsella rubella HOM05D002225 ORTHO05D002271 1.3e-08 63.5 62 51.6
Lsat_1_v5_gn_4_26401 Lactuca sativa HOM05D002225 ORTHO05D002271 1.7e-08 63.2 85 38.8
A01p34860 Brassica napus HOM05D002225 ORTHO05D002271 2.9e-08 62.4 73 43.8
BraA01t03569Z Brassica rapa HOM05D002225 ORTHO05D002271 2.9e-08 62.4 73 43.8
Thhalv10020435m.g Eutrema salsugineum HOM05D002225 ORTHO05D002271 2.9e-08 62.4 60 51.7
AL3G33450 Arabidopsis lyrata HOM05D002225 ORTHO05D002271 5.0e-08 61.6 62 50.0
CARHR095420 Cardamine hirsuta HOM05D002225 ORTHO05D002271 5.0e-08 61.6 62 48.4
BcaC09g48946 Brassica carinata HOM05D002225 ORTHO05D002271 6.5e-08 61.2 65 47.7
C01p44260 Brassica napus HOM05D002225 ORTHO05D002271 6.5e-08 61.2 65 47.7
BolC1t04386H Brassica oleracea HOM05D002225 ORTHO05D002271 6.5e-08 61.2 65 47.7
ATR0618G231 Amborella trichopoda HOM05D002225 ORTHO05D002271 8.5e-08 60.8 62 48.4
ECA234G4283 Erigeron canadensis HOM05D002225 ORTHO05D002271 8.5e-08 60.8 65 46.2
Aa31LG8G6750 Aethionema arabicum HOM05D002225 ORTHO05D002271 1.1e-07 60.5 60 50.0
AT3G19895 Arabidopsis thaliana HOM05D002225 ORTHO05D002271 1.4e-07 60.1 62 48.4
COL.COLO4_16616 Corchorus olitorius HOM05D002225 ORTHO05D002271 1.4e-07 60.1 64 46.9
Dinv26526 Davidia involucrata HOM05D002225 ORTHO05D002271 4.2e-07 58.5 60 50.0
Hma1.2p1_0285F.1_g113930 Hydrangea macrophylla HOM05D002225 ORTHO05D002271 4.2e-07 58.5 63 46.0
Nn4g24911 Nelumbo nucifera HOM05D002225 ORTHO05D002271 4.2e-07 58.5 64 43.8
Gohir.A01G146100 Gossypium hirsutum HOM05D002225 ORTHO05D002271 5.5e-07 58.2 63 44.4
Gohir.D01G138600 Gossypium hirsutum HOM05D002225 ORTHO05D002271 5.5e-07 58.2 63 44.4
Gorai.002G167300 Gossypium raimondii HOM05D002225 ORTHO05D002271 5.5e-07 58.2 63 44.4
SalBow2G1711 Salvia bowleyana HOM05D002225 ORTHO05D002271 5.5e-07 58.2 63 49.2
Sp3g17900 Schrenkiella parvula HOM05D002225 ORTHO05D002271 5.5e-07 58.2 60 48.3
CDE05G2843 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 7.2e-07 57.8 84 34.5
Duzib268G1460 Durio zibethinus HOM05D002225 ORTHO05D002271 7.2e-07 57.8 63 44.4
TWI53G1061 Tripterygium wilfordii HOM05D002225 ORTHO05D002271 7.2e-07 57.8 60 46.7
CiPaw.05G167700 Carya illinoinensis HOM05D002225 ORTHO05D002271 9.4e-07 57.4 63 46.0
SMO228G0155 Selaginella moellendorffii HOM05D002225 ORTHO05D002271 9.4e-07 57.4 66 45.5
MD13G1008400 Malus domestica HOM05D002225 ORTHO05D002271 1.2e-06 57.0 63 47.6
MD16G1005900 Malus domestica HOM05D002225 ORTHO05D002271 1.2e-06 57.0 63 47.6
Prupe.1G344700 Prunus persica HOM05D002225 ORTHO05D002271 1.2e-06 57.0 63 47.6
SEGI_40865 Sequoiadendron giganteum HOM05D002225 ORTHO05D002271 1.2e-06 57.0 103 31.1
TWI74G0237 Tripterygium wilfordii HOM05D002225 ORTHO05D002271 1.2e-06 57.0 73 43.8
Ah.01g013070 Amaranthus hybridus HOM05D002225 ORTHO05D002271 1.6e-06 56.6 61 45.9
unitig_22.g6362 Utricularia gibba HOM05D002225 ORTHO05D002271 1.6e-06 56.6 58 44.8
Ciclev10031032m.g Citrus clementina HOM05D002225 ORTHO05D002271 2.1e-06 56.2 65 44.6
Duzib248G1623 Durio zibethinus HOM05D002225 ORTHO05D002271 2.1e-06 56.2 63 42.9
Haze_11735 Corylus avellana HOM05D002225 ORTHO05D002271 2.7e-06 55.8 63 44.4
MD05G1232200 Malus domestica HOM05D001622 ORTHO05D007320 2.7e-06 55.8 44 45.5
PSO063G0669 Papaver somniferum HOM05D002225 ORTHO05D002271 2.7e-06 55.8 63 46.0
Hund24314 Selenicereus undatus HOM05D002225 ORTHO05D002271 2.7e-06 55.8 58 48.3
Lj6A722G88 Lonicera japonica HOM05D002225 ORTHO05D002271 3.6e-06 55.5 60 48.3
MD05G1232500 Malus domestica HOM05D001622 ORTHO05D007320 3.6e-06 55.5 44 45.5
Cfa008724 Carpinus fangiana HOM05D002225 ORTHO05D002271 4.7e-06 55.1 63 44.4
Migut.L00850 Erythranthe guttata HOM05D002225 ORTHO05D002271 4.7e-06 55.1 58 46.6
FvH4_4g36670 Fragaria vesca HOM05D002225 ORTHO05D002271 4.7e-06 55.1 63 42.9
FAN07G1200 Fragaria x ananassa HOM05D002225 ORTHO05D002271 4.7e-06 55.1 63 42.9
FAN12G1732 Fragaria x ananassa HOM05D002225 ORTHO05D002271 4.7e-06 55.1 63 42.9
FAN17G0793 Fragaria x ananassa HOM05D002225 ORTHO05D002271 4.7e-06 55.1 63 42.9
arahy.Tifrunner.gnm1.ann1.RAZH9U Arachis hypogaea HOM05D002225 ORTHO05D002271 6.1e-06 54.7 63 44.4
arahy.Tifrunner.gnm1.ann1.X31W74 Arachis hypogaea HOM05D002225 ORTHO05D002271 6.1e-06 54.7 63 44.4
HanXRQChr01g0028531 Helianthus annuus HOM05D002225 ORTHO05D002271 6.1e-06 54.7 60 43.3
PSO782G2120 Papaver somniferum HOM05D002225 ORTHO05D002271 6.1e-06 54.7 63 44.4
GSVIVG01010189001 Vitis vinifera HOM05D002225 ORTHO05D002271 6.1e-06 54.7 60 46.7
Eucgr.J00840 Eucalyptus grandis HOM05D002225 ORTHO05D002271 7.9e-06 54.3 73 35.6
SGA_v2.0_scaffold258G45747 Striga asiatica HOM05D002225 ORTHO05D002271 7.9e-06 54.3 61 42.6
THA.LOC104826520 Tarenaya hassleriana HOM05D002225 ORTHO05D002271 7.9e-06 54.3 60 45.0
vmacro16008 Vaccinium macrocarpon HOM05D002225 ORTHO05D002271 7.9e-06 54.3 60 43.3


User provided reference genes

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