Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 4.2e-271 937.6 515 100.0
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 7.5e-188 661.0 539 72.5
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 2.4e-186 656.0 543 70.7
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 4.6e-185 651.7 460 73.7
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 9.5e-183 644.0 545 69.7
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 1.1e-181 640.6 456 73.0
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 1.8e-181 639.8 531 69.9
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 6.0e-177 624.8 555 68.1
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 6.0e-177 624.8 552 67.9
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 1.0e-176 624.0 561 65.4
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.3e-176 622.9 558 65.4
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 5.1e-176 621.7 525 64.2
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 6.6e-176 621.3 540 68.1
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.1e-175 620.5 434 72.4
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 1.9e-175 619.8 547 68.2
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.9e-175 619.8 540 67.0
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 1.9e-175 619.8 529 64.1
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 2.5e-175 619.4 558 63.4
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.2e-174 617.1 493 66.3
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 8.1e-174 614.4 524 69.3
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 1.1e-173 614.0 558 65.9
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 1.8e-173 613.2 442 71.0
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.8e-173 613.2 492 67.3
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 2.3e-173 612.8 528 67.0
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 4.0e-173 612.1 434 72.1
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 4.0e-173 612.1 507 64.3
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 8.9e-173 610.9 530 68.7
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 1.2e-172 610.5 552 66.5
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 5.8e-172 608.2 451 69.6
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 7.5e-172 607.8 443 70.7
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 9.9e-172 607.4 492 68.1
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 9.9e-172 607.4 552 65.0
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 1.3e-171 607.1 450 69.6
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 1.3e-171 607.1 458 69.4
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 2.2e-171 606.3 529 65.8
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 2.2e-171 606.3 516 64.7
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 2.9e-171 605.9 551 66.2
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 3.7e-171 605.5 442 70.8
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 1.1e-170 604.0 499 66.1
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 1.1e-170 604.0 456 69.3
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 1.4e-170 603.6 540 67.6
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 1.4e-170 603.6 512 66.0
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 3.2e-170 602.4 438 70.8
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 2.7e-169 599.4 504 65.3
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 2.7e-169 599.4 456 68.2
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 1.3e-168 597.0 532 65.4
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 1.3e-168 597.0 519 64.4
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 5.1e-168 595.1 548 65.9
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.1e-167 594.0 493 64.5
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 1.5e-167 593.6 522 62.5
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 1.5e-167 593.6 502 64.7
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.6e-166 590.1 548 67.3
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 2.1e-166 589.7 500 64.8
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 3.6e-166 589.0 427 69.6
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 3.6e-166 589.0 521 64.1
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.2e-166 588.2 527 66.4
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 1.1e-165 587.4 527 66.2
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 1.8e-165 586.6 525 63.4
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 2.4e-165 586.3 532 64.8
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 6.8e-165 584.7 525 65.9
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 3.4e-164 582.4 529 66.9
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 2.9e-163 579.3 455 67.0
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 1.1e-162 577.4 498 63.5
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 1.4e-162 577.0 542 61.3
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 2.4e-162 576.2 504 63.1
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 3.2e-162 575.9 489 63.6
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 1.6e-161 573.5 490 64.7
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 4.6e-161 572.0 428 69.4
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 1.0e-160 570.9 561 57.4
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 1.0e-160 570.9 523 62.3
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 1.1e-159 567.4 433 67.4
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 1.5e-159 567.0 438 66.2
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 2.5e-159 566.2 447 66.7
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 5.6e-159 565.1 487 63.7
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 9.6e-159 564.3 500 62.4
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 1.6e-158 563.5 489 64.6
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 2.1e-158 563.1 488 62.9
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 3.6e-158 562.4 420 69.3
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 3.6e-158 562.4 435 66.9
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 3.6e-158 562.4 435 66.9
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 6.2e-158 561.6 491 64.2
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 6.2e-158 561.6 448 65.6
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 8.1e-158 561.2 420 69.3
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 1.1e-157 560.8 492 64.4
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 2.4e-157 559.7 420 69.0
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 4.0e-157 558.9 432 67.1
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 9.0e-157 557.8 520 59.8
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 1.5e-156 557.0 455 64.4
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 2.6e-156 556.2 500 60.2
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 9.9e-156 554.3 438 66.2
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 1.4e-154 550.4 433 66.7
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 2.1e-153 546.6 466 62.9
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 3.5e-153 545.8 430 64.4
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 4.6e-153 545.4 420 67.6
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 5.6e-151 538.5 443 64.8
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 2.1e-150 536.6 397 69.8
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 1.4e-149 533.9 517 60.5
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 7.9e-145 518.1 510 56.5
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.7e-144 515.0 529 61.1
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.1e-143 514.2 528 61.6
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 4.3e-143 512.3 491 58.7
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 5.6e-143 511.9 489 55.8
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 4.8e-142 508.8 493 59.2
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 6.2e-142 508.4 355 72.1
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 3.4e-140 502.7 485 57.7
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 7.9e-137 491.5 523 53.9
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 3.9e-136 489.2 523 53.7
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.1e-135 487.6 396 64.6
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 1.1e-133 481.1 494 53.0
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 4.0e-133 479.2 512 56.2
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 5.8e-132 475.3 488 53.7
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 5.8e-132 475.3 475 54.7
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 1.7e-131 473.8 487 55.6
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 8.4e-131 471.5 485 53.0
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 2.5e-130 469.9 422 63.0
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 2.5e-130 469.9 421 61.5
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 4.6e-129 465.7 500 52.6
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 7.9e-129 464.9 468 55.3
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 1.0e-128 464.5 474 51.9
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 2.8e-126 456.4 429 59.2
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.3e-120 436.8 500 49.8
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 1.1e-119 434.5 403 55.6
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 3.8e-115 419.5 500 57.0
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 7.2e-114 415.2 392 58.4
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 2.0e-111 407.1 446 49.6
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 5.5e-106 389.0 466 48.3
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 3.9e-104 382.9 430 48.4
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 8.8e-104 381.7 385 55.3
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 4.4e-103 379.4 435 48.5
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 5.7e-103 379.0 405 52.3
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 6.3e-102 375.6 500 47.6
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 1.2e-100 371.3 693 38.1
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 2.9e-99 366.7 348 57.8
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 5.5e-98 362.5 499 47.1
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 1.7e-94 350.9 499 44.9
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 1.7e-91 340.9 277 60.3
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 2.9e-91 340.1 510 44.1
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 2.9e-91 340.1 502 45.2
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 1.9e-90 337.4 417 49.2
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 4.7e-89 332.8 404 46.0
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 3.5e-84 316.6 459 43.4
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 4.5e-84 316.2 345 51.0
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 1.2e-81 308.1 506 41.3
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 3.7e-78 296.6 259 61.8
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 1.5e-74 284.6 406 44.1
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 2.3e-72 277.3 267 65.5
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 5.4e-69 266.2 313 44.4
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 1.6e-68 264.6 186 72.6
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 1.6e-68 264.6 283 52.7
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 2.7e-68 263.8 262 57.6
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 8.6e-67 258.8 322 49.1
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.6e-60 238.0 289 45.3
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 1.7e-38 164.9 264 43.2
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 1.1e-37 162.2 108 70.4
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 2.4e-29 134.4 99 63.6
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 1.1e-26 125.6 253 37.5
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 1.6e-25 121.7 137 54.7
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 8.4e-22 109.4 220 41.4
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 1.6e-20 105.1 123 48.0
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 8.7e-19 99.4 71 64.8
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 1.4e-16 92.0 76 56.6
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 4.1e-16 90.5 72 62.5
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 2.6e-15 87.8 45 84.4
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 2.2e-14 84.7 66 56.1
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 3.8e-14 84.0 46 82.6
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 3.2e-13 80.9 232 28.4
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 9.3e-13 79.3 62 64.5
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 1.6e-12 78.6 122 37.7
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 1.0e-11 75.9 120 41.7
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 3.0e-11 74.3 114 45.6
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 2.5e-10 71.2 98 42.9
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 2.2e-09 68.2 80 52.5
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 2.8e-09 67.8 75 46.7
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 1.8e-08 65.1 106 37.7
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 7.7e-07 59.7 39 79.5


User provided reference genes

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