Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_14.g30622 Utricularia gibba HOM05D002582 ORTHO05D002781 9.5e-173 610.1 320 100.0
unitig_8.g4208 Utricularia gibba HOM05D002582 ORTHO05D002781 1.5e-133 479.9 260 99.6
Dinv31725 Davidia involucrata HOM05D002582 ORTHO05D002781 7.2e-64 248.4 265 56.2
Oeu017695.2 Olea europaea HOM05D002582 ORTHO05D002781 8.8e-62 241.5 264 54.9
Cc06_g06230 Coffea canephora HOM05D002582 ORTHO05D002781 4.4e-61 239.2 266 56.0
Migut.J00661 Erythranthe guttata HOM05D002582 ORTHO05D002781 2.8e-60 236.5 251 57.0
SGA_v2.0_scaffold13G06691 Striga asiatica HOM05D002582 ORTHO05D002781 6.3e-60 235.3 272 54.4
Actinidia05397 Actinidia chinensis HOM05D002582 ORTHO05D002781 2.0e-58 230.3 264 55.3
Nn6g34803 Nelumbo nucifera HOM05D002582 ORTHO05D002781 3.5e-58 229.6 271 51.7
Nitab4.5_0000573g0120 Nicotiana tabacum HOM05D002582 ORTHO05D002781 1.0e-57 228.0 261 55.6
Peaxi162Scf00013g01411 Petunia axillaris HOM05D002582 ORTHO05D002781 1.0e-57 228.0 261 54.4
COL.COLO4_29664 Corchorus olitorius HOM05D002582 ORTHO05D002781 3.8e-57 226.1 259 53.7
CSS0000696 Camellia sinensis var. sinensis HOM05D002582 ORTHO05D002781 5.0e-57 225.7 264 54.5
MSTRG.5869 Avicennia marina HOM05D002582 ORTHO05D002781 2.5e-56 223.4 245 56.3
MSTRG.19280 Avicennia marina HOM05D002582 ORTHO05D002781 3.2e-56 223.0 247 58.3
Rhsim01G0258700 Rhododendron simsii HOM05D002582 ORTHO05D002781 3.2e-56 223.0 259 54.4
ATR0081G061 Amborella trichopoda HOM05D002582 ORTHO05D002781 5.5e-56 222.2 279 51.3
Prupe.7G100800 Prunus persica HOM05D002582 ORTHO05D002781 6.1e-55 218.8 263 52.5
GSVIVG01033899001 Vitis vinifera HOM05D002582 ORTHO05D002781 6.1e-55 218.8 272 51.8
Manes.08G028900 Manihot esculenta HOM05D002582 ORTHO05D002781 8.0e-55 218.4 261 52.1
Sc02g0000470 Simmondsia chinensis HOM05D002582 ORTHO05D002781 1.4e-54 217.6 264 53.4
Sopen09g004980 Solanum pennellii HOM05D002582 ORTHO05D002781 1.4e-54 217.6 266 52.6
EL10Ac7g16845 Beta vulgaris HOM05D002582 ORTHO05D002781 1.8e-54 217.2 260 53.5
TWI77G0235 Tripterygium wilfordii HOM05D002582 ORTHO05D002781 2.3e-54 216.9 263 54.0
AUR62006244 Chenopodium quinoa HOM05D002582 ORTHO05D002781 3.0e-54 216.5 260 53.1
FvH4_6g19540 Fragaria vesca HOM05D002582 ORTHO05D002781 3.0e-54 216.5 264 51.1
vmacro14777 Vaccinium macrocarpon HOM05D002582 ORTHO05D002781 5.2e-54 215.7 261 54.4
CAN.G397.91 Capsicum annuum HOM05D002582 ORTHO05D002781 6.8e-54 215.3 262 52.3
MD14G1032100 Malus domestica HOM05D002582 ORTHO05D002781 6.8e-54 215.3 261 52.5
Solyc09g010280.3 Solanum lycopersicum HOM05D002582 ORTHO05D002781 6.8e-54 215.3 266 52.3
Medtr1g058390 Medicago truncatula HOM05D002582 ORTHO05D002781 8.8e-54 214.9 266 50.4
FAN14G0204 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.5e-53 214.2 264 50.8
VMungo0720G2392 Vigna mungo HOM05D002582 ORTHO05D002781 3.4e-53 213.0 265 50.9
Duzib093G1566 Durio zibethinus HOM05D002582 ORTHO05D002781 4.4e-53 212.6 267 51.3
Glyma.10G075900 Glycine max HOM05D002582 ORTHO05D002781 4.4e-53 212.6 266 51.9
HanXRQChr09g0238341 Helianthus annuus HOM05D002582 ORTHO05D002781 5.7e-53 212.2 268 52.6
Lj5g0016358 Lotus japonicus HOM05D002582 ORTHO05D002781 5.7e-53 212.2 263 51.3
Psat6g080080 Pisum sativum HOM05D002582 ORTHO05D002781 9.8e-53 211.5 265 50.2
Lsat_1_v5_gn_6_35600 Lactuca sativa HOM05D002582 ORTHO05D002781 1.7e-52 210.7 262 50.8
RcHm_v2.0_Chr3g0474881 Rosa chinensis HOM05D002582 ORTHO05D002781 1.7e-52 210.7 265 51.3
Thecc.05G096300 Theobroma cacao HOM05D002582 ORTHO05D002781 1.7e-52 210.7 268 50.4
Potri.006G208300 Populus trichocarpa HOM05D002582 ORTHO05D002781 3.7e-52 209.5 263 52.5
Glyma.02G200700 Glycine max HOM05D002582 ORTHO05D002781 6.3e-52 208.8 266 51.5
FAN02G2142 Fragaria x ananassa HOM05D002582 ORTHO05D002781 8.3e-52 208.4 268 50.7
ECA233G2523 Erigeron canadensis HOM05D002582 ORTHO05D002781 1.4e-51 207.6 262 51.9
MD12G1031800 Malus domestica HOM05D002582 ORTHO05D002781 1.4e-51 207.6 267 50.2
arahy.Tifrunner.gnm1.ann1.L9F1QW Arachis hypogaea HOM05D002582 ORTHO05D002781 2.4e-51 206.8 265 51.7
FAN05G0212 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.1e-51 206.5 267 50.2
Phvul.007G230450 Phaseolus vulgaris HOM05D002582 ORTHO05D002781 4.1e-51 206.1 265 50.2
Ca_25956_v3 Cicer arietinum L. HOM05D002582 ORTHO05D002781 7.0e-51 205.3 265 49.8
Gohir.D04G096400 Gossypium hirsutum HOM05D002582 ORTHO05D002781 7.0e-51 205.3 268 51.1
FAN05G2352 Fragaria x ananassa HOM05D002582 ORTHO05D002781 9.2e-51 204.9 267 49.8
Gorai.009G399100 Gossypium raimondii HOM05D002582 ORTHO05D002781 9.2e-51 204.9 268 51.1
Lalb_Chr06g0172521 Lupinus albus HOM05D002582 ORTHO05D002781 9.2e-51 204.9 266 50.8
TWI74G1463 Tripterygium wilfordii HOM05D002582 ORTHO05D002781 1.2e-50 204.5 262 51.5
Atru.chr8.1437 Acer truncatum HOM05D002582 ORTHO05D002781 4.5e-50 202.6 259 51.7
Cpa.g.sc104.87 Carica papaya HOM05D002582 ORTHO05D002781 5.9e-50 202.2 264 50.4
Cfa016652 Carpinus fangiana HOM05D002582 ORTHO05D002781 1.3e-49 201.1 265 50.6
arahy.Tifrunner.gnm1.ann1.YV8VHR Arachis hypogaea HOM05D002582 ORTHO05D002781 2.9e-49 199.9 284 48.6
Lj2A144G24 Lonicera japonica HOM05D002582 ORTHO05D002781 5.0e-49 199.1 307 43.3
PGR004G1279 Punica granatum HOM05D002582 ORTHO05D002781 5.0e-49 199.1 264 50.4
CiPaw.10G012900 Carya illinoinensis HOM05D002582 ORTHO05D002781 8.6e-49 198.4 265 49.1
TPR.G40320 Trifolium pratense HOM05D002582 ORTHO05D002781 1.9e-48 197.2 271 46.5
Potri.016G074900 Populus trichocarpa HOM05D002582 ORTHO05D002781 2.5e-48 196.8 261 47.9
Ciclev10011033m.g Citrus clementina HOM05D002582 ORTHO05D002781 4.3e-48 196.1 261 49.8
QL07p038072 Quercus lobata HOM05D002582 ORTHO05D002781 9.5e-48 194.9 255 51.4
PSO339G0972 Papaver somniferum HOM05D002582 ORTHO05D002781 1.2e-47 194.5 263 49.4
Thhalv10020029m.g Eutrema salsugineum HOM05D002582 ORTHO05D002781 1.6e-47 194.1 266 49.6
TAR369G0677 Trochodendron aralioides HOM05D002582 ORTHO05D002781 1.6e-47 194.1 253 48.6
Carub.0006s0509 Capsella rubella HOM05D002582 ORTHO05D002781 2.1e-47 193.7 262 47.7
A05p37770 Brassica napus HOM05D002582 ORTHO05D002781 2.8e-47 193.4 262 46.9
Gohir.A04G059778 Gossypium hirsutum HOM05D002582 ORTHO05D002781 2.8e-47 193.4 268 49.3
Sabra06G0160200 Salix brachista HOM05D002582 ORTHO05D002781 3.6e-47 193.0 264 50.8
AL3G23110 Arabidopsis lyrata HOM05D002582 ORTHO05D002781 4.7e-47 192.6 262 49.2
BcaB01g05735 Brassica carinata HOM05D002582 ORTHO05D002781 4.7e-47 192.6 270 47.8
A03p02620 Brassica napus HOM05D002582 ORTHO05D002781 4.7e-47 192.6 274 48.2
BraA03t09623Z Brassica rapa HOM05D002582 ORTHO05D002781 4.7e-47 192.6 274 48.2
BraA05t22572Z Brassica rapa HOM05D002582 ORTHO05D002781 6.1e-47 192.2 262 46.9
CANSAT64G0891 Cannabis sativa HOM05D002582 ORTHO05D002781 6.1e-47 192.2 254 48.4
TAR623G1676 Trochodendron aralioides HOM05D002582 ORTHO05D002781 8.0e-47 191.8 259 49.8
AUR62028482 Chenopodium quinoa HOM05D002582 ORTHO05D002781 1.0e-46 191.4 318 44.0
THA.LOC104816603 Tarenaya hassleriana HOM05D002582 ORTHO05D002781 1.4e-46 191.0 266 48.1
Os08g0482100 Oryza sativa ssp. japonica HOM05D002582 ORTHO05D002781 1.8e-46 190.7 264 47.7
FAN09G2395 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.3e-46 190.3 253 49.0
AT3G11560 Arabidopsis thaliana HOM05D002582 ORTHO05D002781 5.2e-46 189.1 265 47.9
HPP92_013111 Vanilla planifolia HOM05D002582 ORTHO05D002781 5.2e-46 189.1 259 46.7
HPP92_013132 Vanilla planifolia HOM05D002582 ORTHO05D002781 5.2e-46 189.1 259 46.7
BcaB06g25608 Brassica carinata HOM05D002582 ORTHO05D002781 1.2e-45 188.0 265 46.4
Carub.0003s1088 Capsella rubella HOM05D002582 ORTHO05D002781 1.2e-45 188.0 265 47.2
Ca_09028_v3 Cicer arietinum L. HOM05D002582 ORTHO05D002781 1.2e-45 188.0 262 50.8
BcaB01g05984 Brassica carinata HOM05D002582 ORTHO05D002781 2.0e-45 187.2 278 47.8
C03p03010 Brassica napus HOM05D002582 ORTHO05D002781 2.0e-45 187.2 278 47.8
Sabra16G0077500 Salix brachista HOM05D002582 ORTHO05D002781 2.6e-45 186.8 259 47.9
Sed0021820 Sechium edule HOM05D002582 ORTHO05D002781 5.7e-45 185.7 260 48.5
BolC3t12851H Brassica oleracea HOM05D002582 ORTHO05D002781 9.8e-45 184.9 274 47.1
Sp3g09800 Schrenkiella parvula HOM05D002582 ORTHO05D002781 9.8e-45 184.9 263 47.5
C05p56390 Brassica napus HOM05D002582 ORTHO05D002781 1.3e-44 184.5 265 45.3
BolC5t34306H Brassica oleracea HOM05D002582 ORTHO05D002781 1.3e-44 184.5 265 45.3
C09p70660 Brassica napus HOM05D002582 ORTHO05D002781 1.7e-44 184.1 273 46.5
BolC9t59822H Brassica oleracea HOM05D002582 ORTHO05D002781 1.7e-44 184.1 273 46.5
Zm00001eb033410 Zea mays HOM05D002582 ORTHO05D002781 1.7e-44 184.1 265 47.9
Eucgr.A02629 Eucalyptus grandis HOM05D002582 ORTHO05D002781 2.9e-44 183.3 274 47.4
BcaC05g29355 Brassica carinata HOM05D002582 ORTHO05D002781 3.7e-44 183.0 265 45.3
DCAR_013417 Daucus carota HOM05D002582 ORTHO05D002781 4.9e-44 182.6 262 49.6
A10p30250 Brassica napus HOM05D002582 ORTHO05D002781 6.4e-44 182.2 267 46.1
BraA10t45063Z Brassica rapa HOM05D002582 ORTHO05D002781 6.4e-44 182.2 267 46.1
ECA248G1278 Erigeron canadensis HOM05D002582 ORTHO05D002781 1.8e-43 180.6 257 47.5
PSO801G0394 Papaver somniferum HOM05D002582 ORTHO05D002781 2.4e-43 180.3 250 47.6
CARHR206920 Cardamine hirsuta HOM05D002582 ORTHO05D002781 5.4e-43 179.1 252 46.8
Hma1.2p1_2017F.1_g311170 Hydrangea macrophylla HOM05D002582 ORTHO05D002781 1.2e-42 177.9 228 49.6
DCAR_007764 Daucus carota HOM05D002582 ORTHO05D002781 1.6e-42 177.6 259 47.9
CsaV3_6G040880 Cucumis sativus L. HOM05D002582 ORTHO05D002781 2.7e-42 176.8 261 47.1
Aqoxy2G01049 Aquilegia oxysepala HOM05D002582 ORTHO05D002781 3.5e-42 176.4 272 47.1
AT5G06220 Arabidopsis thaliana HOM05D002582 ORTHO05D002781 1.0e-41 174.9 253 45.1
CARHR086110 Cardamine hirsuta HOM05D002582 ORTHO05D002781 1.0e-41 174.9 254 46.1
Medtr7g105340 Medicago truncatula HOM05D002582 ORTHO05D002781 3.0e-41 173.3 264 48.9
MELO3C024566.2 Cucumis melo HOM05D002582 ORTHO05D002781 3.9e-41 172.9 245 48.2
CDE04G1506 Ceratophyllum demersum HOM05D002582 ORTHO05D002781 6.6e-41 172.2 254 44.5
Sp6g36660 Schrenkiella parvula HOM05D002582 ORTHO05D002781 8.6e-41 171.8 256 45.7
ClCG04G010240 Citrullus lanatus HOM05D002582 ORTHO05D002781 1.5e-40 171.0 254 46.9
AL6G16220 Arabidopsis lyrata HOM05D002582 ORTHO05D002781 1.9e-40 170.6 250 45.6
Thhalv10012627m.g Eutrema salsugineum HOM05D002582 ORTHO05D002781 2.5e-40 170.2 270 46.3
BcaC06g32587 Brassica carinata HOM05D002582 ORTHO05D002781 1.2e-39 167.9 272 45.2
Sed0005359 Sechium edule HOM05D002582 ORTHO05D002781 1.2e-39 167.9 248 46.4
Sabra16G0080300 Salix brachista HOM05D002582 ORTHO05D002781 6.2e-39 165.6 295 43.4
Lalb_Chr02g0154741 Lupinus albus HOM05D002582 ORTHO05D002781 5.4e-35 152.5 259 44.0
Aa31LG3G4950 Aethionema arabicum HOM05D002582 ORTHO05D002781 3.9e-33 146.4 255 41.2
CDE12G0162 Ceratophyllum demersum HOM05D002582 ORTHO05D002781 8.9e-30 135.2 224 41.1
Ah.08g210320 Amaranthus hybridus HOM05D002582 ORTHO05D002781 3.4e-29 133.3 178 48.3
Aa31LG11G7180 Aethionema arabicum HOM05D002582 ORTHO05D002781 5.8e-29 132.5 262 39.3
Gohir.A04G059752 Gossypium hirsutum HOM05D002582 ORTHO05D002781 2.9e-28 130.2 275 40.0
Psat3g031120 Pisum sativum HOM05D002582 ORTHO05D002781 4.1e-27 126.3 258 36.8
Sabra16G0077100 Salix brachista HOM05D002582 ORTHO05D002781 3.6e-23 113.2 156 46.8
Haze_19658 Corylus avellana HOM05D002582 ORTHO05D002781 8.4e-20 102.1 169 43.8
arahy.Tifrunner.gnm1.ann1.EIYV9M Arachis hypogaea HOM05D002582 ORTHO05D002781 2.7e-18 97.1 204 39.7
Aa31sc2197G10 Aethionema arabicum HOM05D002582 ORTHO05D002781 6.6e-17 92.4 60 80.0
Ah.08g210330 Amaranthus hybridus HOM05D002582 ORTHO05D002781 8.7e-17 92.0 62 77.4
Oeu010762.1 Olea europaea HOM05D002582 ORTHO05D002781 1.9e-16 90.9 65 72.3
CSS0012526 Camellia sinensis var. sinensis HOM05D002582 ORTHO05D002781 9.6e-16 88.6 56 82.1
Pp3c14_11120 Physcomitrium patens HOM05D002582 ORTHO05D002781 1.4e-14 84.7 286 30.8
TPR.G23311 Trifolium pratense HOM05D002582 ORTHO05D002781 2.4e-14 84.0 97 51.5
Glyma.03G198750 Glycine max HOM05D002582 ORTHO05D002781 4.0e-14 83.2 72 63.9
Pp3c22_13150 Physcomitrium patens HOM05D002582 ORTHO05D002781 4.0e-14 83.2 267 31.8
Sabra16G0077200 Salix brachista HOM05D002582 ORTHO05D002781 2.6e-13 80.5 100 51.0
arahy.Tifrunner.gnm1.ann1.J4PW6C Arachis hypogaea HOM05D002582 ORTHO05D002781 6.4e-12 75.9 191 36.6
TPR.G23364 Trifolium pratense HOM05D002582 ORTHO05D002781 8.4e-12 75.5 62 67.7
arahy.Tifrunner.gnm1.ann1.9YR8R7 Arachis hypogaea HOM05D002582 ORTHO05D002781 4.2e-11 73.2 225 31.6
BcaB06g26365 Brassica carinata HOM05D002582 ORTHO05D002781 6.6e-09 65.9 167 34.7
BcaC06g32329 Brassica carinata HOM05D002582 ORTHO05D002781 2.5e-08 63.9 54 66.7
MD07G1078100 Malus domestica HOM05D000001 ORTHO05D009373 7.3e-08 62.4 114 45.6
SMO364G0473 Selaginella moellendorffii HOM05D002582 ORTHO05D002781 6.9e-06 55.8 258 24.4


User provided reference genes

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