Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g972 Utricularia gibba HOM05D003368 ORTHO05D001293 7.8e-85 317.0 150 100.0
unitig_749.g14082 Utricularia gibba HOM05D003368 ORTHO05D001293 2.9e-31 139.0 77 81.8
MSTRG.4064 Avicennia marina HOM05D003368 ORTHO05D001293 1.1e-22 110.5 70 68.6
SGA_v2.0_scaffold353G49714 Striga asiatica HOM05D003368 ORTHO05D001293 1.9e-22 109.8 78 66.7
Sc25g0004240 Simmondsia chinensis HOM05D003368 ORTHO05D001293 3.2e-22 109.0 64 76.6
SalBow2G0900 Salvia bowleyana HOM05D003368 ORTHO05D001293 4.2e-22 108.6 62 77.4
THA.LOC104803045 Tarenaya hassleriana HOM05D003368 ORTHO05D001293 5.5e-22 108.2 66 72.7
THA.LOC104810677 Tarenaya hassleriana HOM05D003368 ORTHO05D001293 5.5e-22 108.2 66 72.7
Gohir.A09G219500 Gossypium hirsutum HOM05D003368 ORTHO05D001293 7.1e-22 107.8 62 79.0
Gorai.006G242900 Gossypium raimondii HOM05D003368 ORTHO05D001293 7.1e-22 107.8 62 79.0
GSVIVG01018049001 Vitis vinifera HOM05D003368 ORTHO05D001293 7.1e-22 107.8 63 77.8
Aa31LG8G9360 Aethionema arabicum HOM05D003368 ORTHO05D001293 1.2e-21 107.1 59 83.1
Migut.G00386 Erythranthe guttata HOM05D003368 ORTHO05D001293 1.6e-21 106.7 78 64.1
Sabra10G0061200 Salix brachista HOM05D003368 ORTHO05D001293 1.6e-21 106.7 63 77.8
Thhalv10021495m.g Eutrema salsugineum HOM05D003368 ORTHO05D001293 2.1e-21 106.3 62 79.0
Gohir.D09G221700 Gossypium hirsutum HOM05D003368 ORTHO05D001293 2.1e-21 106.3 62 77.4
Potri.010G081700 Populus trichocarpa HOM05D003368 ORTHO05D001293 2.7e-21 105.9 63 76.2
SGA_v2.0_scaffold191G40422 Striga asiatica HOM05D003368 ORTHO05D001293 2.7e-21 105.9 69 68.1
AL3G37180 Arabidopsis lyrata HOM05D003368 ORTHO05D001293 4.6e-21 105.1 62 75.8
AT3G22845 Arabidopsis thaliana HOM05D003368 ORTHO05D001293 4.6e-21 105.1 62 75.8
Carub.0003s2298 Capsella rubella HOM05D003368 ORTHO05D001293 4.6e-21 105.1 62 75.8
CARHR098730 Cardamine hirsuta HOM05D003368 ORTHO05D001293 4.6e-21 105.1 62 77.4
CiPaw.02G120000 Carya illinoinensis HOM05D003368 ORTHO05D001293 4.6e-21 105.1 61 78.7
Glyma.20G150700 Glycine max HOM05D003368 ORTHO05D001293 4.6e-21 105.1 65 73.8
ClCG05G004840 Citrullus lanatus HOM05D003368 ORTHO05D001293 6.0e-21 104.8 64 71.9
Duzib151G0270 Durio zibethinus HOM05D003368 ORTHO05D001293 6.0e-21 104.8 72 66.7
Sp3g20560 Schrenkiella parvula HOM05D003368 ORTHO05D001293 6.0e-21 104.8 62 77.4
THA.LOC104822256 Tarenaya hassleriana HOM05D003368 ORTHO05D001293 6.0e-21 104.8 61 75.4
CiPaw.01G194900 Carya illinoinensis HOM05D003368 ORTHO05D001293 7.9e-21 104.4 62 74.2
AUR62038284 Chenopodium quinoa HOM05D003368 ORTHO05D001293 7.9e-21 104.4 53 86.8
Duzib052G0206 Durio zibethinus HOM05D003368 ORTHO05D001293 7.9e-21 104.4 72 66.7
Duzib052G0886 Durio zibethinus HOM05D003368 ORTHO05D001293 7.9e-21 104.4 72 66.7
THA.LOC104808574 Tarenaya hassleriana HOM05D003368 ORTHO05D001293 7.9e-21 104.4 61 75.4
ATR0665G231 Amborella trichopoda HOM05D003368 ORTHO05D001293 1.0e-20 104.0 82 64.6
COL.COLO4_21572 Corchorus olitorius HOM05D003368 ORTHO05D001293 1.0e-20 104.0 72 68.1
Thecc.04G239400 Theobroma cacao HOM05D003368 ORTHO05D001293 1.0e-20 104.0 62 74.2
Cpa.g.sc44.126 Carica papaya HOM05D003368 ORTHO05D001293 1.3e-20 103.6 64 79.7
Ciclev10005664m.g Citrus clementina HOM05D003368 ORTHO05D001293 1.8e-20 103.2 65 67.7
Duzib212G0323 Durio zibethinus HOM05D003368 ORTHO05D001293 1.8e-20 103.2 72 66.7
Oeu064213.1 Olea europaea HOM05D003368 ORTHO05D001293 1.8e-20 103.2 82 63.4
Ah.04g154190 Amaranthus hybridus HOM05D003368 ORTHO05D001293 2.3e-20 102.8 62 74.2
Hund20649 Selenicereus undatus HOM05D003368 ORTHO05D001293 2.3e-20 102.8 59 78.0
PSO210G1318 Papaver somniferum HOM05D003368 ORTHO05D001293 3.0e-20 102.4 53 84.9
PSO511G0001 Papaver somniferum HOM05D003368 ORTHO05D001293 3.0e-20 102.4 53 84.9
TWI09G0264 Tripterygium wilfordii HOM05D003368 ORTHO05D001293 3.0e-20 102.4 72 68.1
VMungo0720G1945 Vigna mungo HOM05D003368 ORTHO05D001293 3.0e-20 102.4 65 73.8
EL10Ac3g06507 Beta vulgaris HOM05D003368 ORTHO05D001293 3.9e-20 102.1 53 83.0
BcaB06g26401 Brassica carinata HOM05D003368 ORTHO05D001293 3.9e-20 102.1 62 74.2
CANSAT78G2035 Cannabis sativa HOM05D003368 ORTHO05D001293 3.9e-20 102.1 79 62.0
Cfa008429 Carpinus fangiana HOM05D000770 ORTHO05D000586 3.9e-20 102.1 62 74.2
AUR62034682 Chenopodium quinoa HOM05D003368 ORTHO05D001293 3.9e-20 102.1 53 84.9
QL06p000857 Quercus lobata HOM05D003368 ORTHO05D001293 3.9e-20 102.1 59 76.3
TWI73G0209 Tripterygium wilfordii HOM05D003368 ORTHO05D001293 3.9e-20 102.1 63 74.6
BcaC05g28011 Brassica carinata HOM05D003368 ORTHO05D001293 5.1e-20 101.7 62 75.8
A05p25850 Brassica napus HOM05D003368 ORTHO05D001293 5.1e-20 101.7 62 75.8
C05p40250 Brassica napus HOM05D003368 ORTHO05D001293 5.1e-20 101.7 62 75.8
BolC5t32767H Brassica oleracea HOM05D003368 ORTHO05D001293 5.1e-20 101.7 62 75.8
CDE10G0604 Ceratophyllum demersum HOM05D003368 ORTHO05D001293 5.1e-20 101.7 58 75.9
Eucgr.B01001 Eucalyptus grandis HOM05D003368 ORTHO05D001293 5.1e-20 101.7 62 74.2
Glyma.10G243500 Glycine max HOM05D003368 ORTHO05D001293 5.1e-20 101.7 65 72.3
Atru.chr4.2336 Acer truncatum HOM05D003368 ORTHO05D001293 6.7e-20 101.3 65 70.8
Atru.chr4.2350 Acer truncatum HOM05D003368 ORTHO05D001293 6.7e-20 101.3 65 70.8
BcaB03g14647 Brassica carinata HOM05D003368 ORTHO05D001293 6.7e-20 101.3 62 74.2
BcaC01g03415 Brassica carinata HOM05D003368 ORTHO05D001293 6.7e-20 101.3 62 74.2
C03p52800 Brassica napus HOM05D003368 ORTHO05D001293 6.7e-20 101.3 62 74.2
BolC3t17549H Brassica oleracea HOM05D003368 ORTHO05D001293 6.7e-20 101.3 62 74.2
BraA05t21471Z Brassica rapa HOM05D003368 ORTHO05D001293 6.7e-20 101.3 61 75.4
Dinv14049 Davidia involucrata HOM05D003368 ORTHO05D001293 6.7e-20 101.3 62 72.6
Lj5g0021756 Lotus japonicus HOM05D003368 ORTHO05D001293 6.7e-20 101.3 65 69.2
Phvul.007G062200 Phaseolus vulgaris HOM05D003368 ORTHO05D001293 6.7e-20 101.3 65 72.3
Actinidia40116 Actinidia chinensis HOM05D003368 ORTHO05D001293 8.7e-20 100.9 65 69.2
BcaC09g49213 Brassica carinata HOM05D003368 ORTHO05D001293 8.7e-20 100.9 62 74.2
C01p41340 Brassica napus HOM05D003368 ORTHO05D001293 8.7e-20 100.9 62 74.2
BolC1t04093H Brassica oleracea HOM05D003368 ORTHO05D001293 8.7e-20 100.9 62 74.2
CAN.G638.88 Capsicum annuum HOM05D003368 ORTHO05D001293 8.7e-20 100.9 62 75.8
Manes.03G172900 Manihot esculenta HOM05D003368 ORTHO05D001293 8.7e-20 100.9 63 71.4
PGR004G2235 Punica granatum HOM05D003368 ORTHO05D001293 8.7e-20 100.9 61 73.8
BcaB04g20491 Brassica carinata HOM05D003368 ORTHO05D001293 1.1e-19 100.5 62 74.2
CSS0049355 Camellia sinensis var. sinensis HOM05D003368 ORTHO05D001293 1.1e-19 100.5 62 71.0
Haze_11236 Corylus avellana HOM05D003368 ORTHO05D001293 1.1e-19 100.5 70 64.3
MBI16_g18973_MAGBIO Magnolia biondii HOM05D003368 ORTHO05D001293 1.1e-19 100.5 63 69.8
Aqoxy2G03465 Aquilegia oxysepala HOM05D003368 ORTHO05D001293 1.5e-19 100.1 53 81.1
A01p32320 Brassica napus HOM05D003368 ORTHO05D001293 1.5e-19 100.1 62 74.2
A03p42990 Brassica napus HOM05D003368 ORTHO05D001293 1.5e-19 100.1 62 74.2
BraA01t03358Z Brassica rapa HOM05D003368 ORTHO05D001293 1.5e-19 100.1 62 74.2
BraA03t13443Z Brassica rapa HOM05D003368 ORTHO05D001293 1.5e-19 100.1 62 74.2
MELO3C006498.2 Cucumis melo HOM05D003368 ORTHO05D001293 1.5e-19 100.1 62 72.6
Lsat_1_v5_gn_7_64921 Lactuca sativa HOM05D003368 ORTHO05D001293 1.5e-19 100.1 59 74.6
Actinidia18528 Actinidia chinensis HOM05D003368 ORTHO05D001293 1.9e-19 99.8 76 64.5
MSTRG.9948 Avicennia marina HOM05D003368 ORTHO05D001293 1.9e-19 99.8 69 65.2
Ca_10847_v3 Cicer arietinum L. HOM05D003368 ORTHO05D001293 1.9e-19 99.8 62 72.6
Lj6A646T80 Lonicera japonica HOM05D003368 ORTHO05D001293 1.9e-19 99.8 73 63.0
MD13G1200800 Malus domestica HOM05D003368 ORTHO05D001293 1.9e-19 99.8 62 67.7
Sopen03g001300 Solanum pennellii HOM05D003368 ORTHO05D001293 1.9e-19 99.8 62 74.2
PGSC0003DMG400013438 Solanum tuberosum HOM05D003368 ORTHO05D001293 1.9e-19 99.8 62 74.2
TAR365G0778 Trochodendron aralioides HOM05D003368 ORTHO05D001293 1.9e-19 99.8 72 66.7
Gohir.A10G115300 Gossypium hirsutum HOM05D003368 ORTHO05D001293 2.5e-19 99.4 72 66.7
Gohir.D10G151200 Gossypium hirsutum HOM05D003368 ORTHO05D001293 2.5e-19 99.4 72 66.7
Gorai.011G168300 Gossypium raimondii HOM05D003368 ORTHO05D001293 2.5e-19 99.4 72 66.7
Medtr1g102720 Medicago truncatula HOM05D003368 ORTHO05D001293 2.5e-19 99.4 62 74.2
Solyc09g082770.3 Solanum lycopersicum HOM05D003368 ORTHO05D001293 2.5e-19 99.4 62 75.8
Sopen09g031620 Solanum pennellii HOM05D003368 ORTHO05D001293 2.5e-19 99.4 62 75.8
PGSC0003DMG400030171 Solanum tuberosum HOM05D003368 ORTHO05D001293 2.5e-19 99.4 62 75.8
Actinidia04508 Actinidia chinensis HOM05D003368 ORTHO05D001293 3.3e-19 99.0 65 69.2
Cc03_g04330 Coffea canephora HOM05D003368 ORTHO05D001293 3.3e-19 99.0 62 74.2
Nn6g34171 Nelumbo nucifera HOM05D003368 ORTHO05D001293 3.3e-19 99.0 73 67.1
TPR.G26115 Trifolium pratense HOM05D003368 ORTHO05D001293 3.3e-19 99.0 53 79.2
Prupe.1G022300 Prunus persica HOM05D003368 ORTHO05D001293 5.7e-19 98.2 65 67.7
CAN.G1435.11 Capsicum annuum HOM05D003368 ORTHO05D001293 7.4e-19 97.8 62 72.6
MD16G1200100 Malus domestica HOM05D003368 ORTHO05D001293 7.4e-19 97.8 62 66.1
Nn1g02462 Nelumbo nucifera HOM05D003368 ORTHO05D001293 7.4e-19 97.8 63 69.8
Nn7g38450 Nelumbo nucifera HOM05D003368 ORTHO05D001293 7.4e-19 97.8 63 69.8
Hma1.2p1_0549F.1_g177040 Hydrangea macrophylla HOM05D003368 ORTHO05D001293 9.7e-19 97.4 62 72.6
HanXRQChr09g0247511 Helianthus annuus HOM05D003368 ORTHO05D001293 1.3e-18 97.1 50 84.0
CsaV3_3G012880 Cucumis sativus L. HOM05D003368 ORTHO05D001293 1.6e-18 96.7 62 67.7
Peaxi162Scf00467g00017 Petunia axillaris HOM05D003368 ORTHO05D001293 1.6e-18 96.7 62 69.4
Sed0002946 Sechium edule HOM05D003368 ORTHO05D001293 1.6e-18 96.7 62 71.0
Solyc03g005270.3 Solanum lycopersicum HOM05D003368 ORTHO05D001293 1.6e-18 96.7 61 72.1
ECA240G0240 Erigeron canadensis HOM05D003368 ORTHO05D001293 2.2e-18 96.3 63 69.8
CDE05G1819 Ceratophyllum demersum HOM05D003368 ORTHO05D001293 3.7e-18 95.5 64 67.2
CDE10G0234 Ceratophyllum demersum HOM05D003368 ORTHO05D001293 3.7e-18 95.5 58 70.7
Nitab4.5_0007166g0020 Nicotiana tabacum HOM05D003368 ORTHO05D001293 3.7e-18 95.5 62 71.0
Nitab4.5_0000977g0050 Nicotiana tabacum HOM05D003368 ORTHO05D001293 6.3e-18 94.7 62 71.0
RcHm_v2.0_Chr4g0388091 Rosa chinensis HOM05D003368 ORTHO05D001293 6.3e-18 94.7 59 71.2
Nitab4.5_0003815g0010 Nicotiana tabacum HOM05D003368 ORTHO05D001293 8.2e-18 94.4 62 69.4
Sed0004726 Sechium edule HOM05D003368 ORTHO05D001293 8.2e-18 94.4 62 64.5
TWI73G0362 Tripterygium wilfordii HOM05D003368 ORTHO05D001293 8.2e-18 94.4 59 72.9
Nitab4.5_0008088g0010 Nicotiana tabacum HOM05D003368 ORTHO05D001293 1.1e-17 94.0 62 71.0
FvH4_4g01530 Fragaria vesca HOM05D003368 ORTHO05D001293 1.4e-17 93.6 71 57.7
FAN12G4200 Fragaria x ananassa HOM05D003368 ORTHO05D001293 1.4e-17 93.6 71 57.7
Lalb_Chr02g0140721 Lupinus albus HOM05D003368 ORTHO05D001293 1.4e-17 93.6 77 59.7
FAN17G0583 Fragaria x ananassa HOM05D003368 ORTHO05D001293 1.8e-17 93.2 71 57.7
Peaxi162Scf00316g00339 Petunia axillaris HOM05D003368 ORTHO05D001293 1.8e-17 93.2 62 69.4
FAN22G1036 Fragaria x ananassa HOM05D003368 ORTHO05D001293 4.1e-17 92.0 71 57.7
DCAR_030689 Daucus carota HOM05D003368 ORTHO05D001293 5.3e-17 91.7 73 58.9
vmacro15376 Vaccinium macrocarpon HOM05D003368 ORTHO05D001293 5.3e-17 91.7 67 64.2
FAN27G1829 Fragaria x ananassa HOM05D003368 ORTHO05D001293 1.2e-16 90.5 63 61.9
Dinv22501 Davidia involucrata HOM05D003368 ORTHO05D001293 1.5e-16 90.1 63 65.1
vmacro08379 Vaccinium macrocarpon HOM05D003368 ORTHO05D001293 1.5e-16 90.1 53 71.7
Medtr7g095690 Medicago truncatula HOM05D003368 ORTHO05D001293 3.4e-16 89.0 68 58.8
Rhsim04G0196900 Rhododendron simsii HOM05D003368 ORTHO05D001293 3.4e-16 89.0 50 76.0
FAN15G3632 Fragaria x ananassa HOM05D003368 ORTHO05D001293 5.9e-16 88.2 63 63.5
FAN20G0038 Fragaria x ananassa HOM05D003368 ORTHO05D001293 5.9e-16 88.2 63 61.9
TPR.G19112 Trifolium pratense HOM05D003368 ORTHO05D001293 5.9e-16 88.2 68 58.8
Zm00001eb056960 Zea mays HOM05D003368 ORTHO05D001293 5.9e-16 88.2 74 59.5
FvH4_2g22930 Fragaria vesca HOM05D003368 ORTHO05D001293 1.0e-15 87.4 62 62.9
FAN24G1696 Fragaria x ananassa HOM05D003368 ORTHO05D001293 1.0e-15 87.4 62 62.9
Zm00001eb215040 Zea mays HOM05D003368 ORTHO05D001293 1.0e-15 87.4 74 59.5
Atru.chr5.1522 Acer truncatum HOM05D003368 ORTHO05D001293 1.3e-15 87.0 57 66.7
CSS0007907 Camellia sinensis var. sinensis HOM05D003368 ORTHO05D001293 1.3e-15 87.0 63 63.5
Duzib211G0312 Durio zibethinus HOM05D003368 ORTHO05D001293 2.2e-15 86.3 64 59.4
Lalb_Chr06g0160751 Lupinus albus HOM05D003368 ORTHO05D001293 2.2e-15 86.3 62 66.1
Os03g0744800 Oryza sativa ssp. japonica HOM05D003368 ORTHO05D001293 2.2e-15 86.3 51 74.5
Gohir.A01G024000 Gossypium hirsutum HOM05D003368 ORTHO05D001293 2.9e-15 85.9 62 56.5
Sp3g20550 Schrenkiella parvula HOM05D003368 ORTHO05D001293 3.8e-15 85.5 61 67.2
Ca_08634_v3 Cicer arietinum L. HOM05D003368 ORTHO05D001293 5.0e-15 85.1 68 57.4
MD03G1257900 Malus domestica HOM05D003368 ORTHO05D001293 5.0e-15 85.1 49 73.5
Migut.N00213 Erythranthe guttata HOM05D003368 ORTHO05D001293 6.5e-15 84.7 77 53.2
Prupe.8G234600 Prunus persica HOM05D003368 ORTHO05D001293 6.5e-15 84.7 51 72.5
RcHm_v2.0_Chr6g0289891 Rosa chinensis HOM05D003368 ORTHO05D001293 6.5e-15 84.7 66 60.6
SEGI_11762 Sequoiadendron giganteum HOM05D003368 ORTHO05D001293 8.5e-15 84.3 50 72.0
Gohir.D01G022000 Gossypium hirsutum HOM05D003368 ORTHO05D001293 1.4e-14 83.6 62 54.8
Gorai.002G024500 Gossypium raimondii HOM05D003368 ORTHO05D001293 1.4e-14 83.6 62 54.8
MD11G1278600 Malus domestica HOM05D003368 ORTHO05D001293 1.9e-14 83.2 63 61.9
SGA_v2.0_scaffold79G25596 Striga asiatica HOM05D003368 ORTHO05D001293 1.9e-14 83.2 78 52.6
Psat0s2137g0040 Pisum sativum HOM05D003368 ORTHO05D001293 2.5e-14 82.8 67 55.2
Phvul.001G155000 Phaseolus vulgaris HOM05D003368 ORTHO05D001293 3.2e-14 82.4 48 70.8
Glyma.19G159700 Glycine max HOM05D003368 ORTHO05D001293 4.2e-14 82.0 48 75.0
CSS0034510 Camellia sinensis var. sinensis HOM05D003368 ORTHO05D001293 5.5e-14 81.6 59 62.7
CSS0035252 Camellia sinensis var. sinensis HOM05D003368 ORTHO05D001293 5.5e-14 81.6 59 62.7
Thecc.01G271300 Theobroma cacao HOM05D003368 ORTHO05D001293 9.3e-14 80.9 77 48.1
VMungo1383G0090 Vigna mungo HOM05D003368 ORTHO05D001293 1.2e-13 80.5 56 66.1
Ciclev10024247m.g Citrus clementina HOM05D003368 ORTHO05D001293 4.6e-13 78.6 65 55.4
Lj1g0002433 Lotus japonicus HOM05D003368 ORTHO05D001293 1.8e-12 76.6 67 53.7
SMO230G0077 Selaginella moellendorffii HOM05D003368 ORTHO05D001293 5.1e-12 75.1 58 58.6
Pp3c2_2860 Physcomitrium patens HOM05D003368 ORTHO05D001293 4.3e-11 72.0 53 56.6
SEGI_36187 Sequoiadendron giganteum HOM05D003368 ORTHO05D001293 7.4e-11 71.2 79 51.9
GSVIVG01003122001 Vitis vinifera HOM05D003368 ORTHO05D001293 2.8e-10 69.3 40 72.5
AagrBONN_evm.TU.Sc2ySwM_362.235 Anthoceros agrestis HOM05D003368 ORTHO05D001293 1.4e-09 67.0 66 54.5
HPP92_017647 Vanilla planifolia HOM05D003368 ORTHO05D001293 4.1e-09 65.5 58 56.9
Ah.13g071790 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.5e-08 63.5 29 93.1
Pp3c21_13400 Physcomitrium patens HOM05D003368 ORTHO05D001293 3.4e-08 62.4 59 49.2
DCAR_024188 Daucus carota HOM05D000352 ORTHO05D001293 5.0e-07 58.5 28 89.3
CDE02G4273 Ceratophyllum demersum HOM05D003368 ORTHO05D001293 8.5e-07 57.8 29 82.8
Lj3C725G1 Lonicera japonica HOM05D003368 ORTHO05D001293 9.4e-06 54.3 39 61.5


User provided reference genes

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