Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 2.1e-158 562.4 291 100.0
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.5e-121 439.9 288 79.2
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 3.2e-119 432.2 288 77.1
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 9.3e-119 430.6 299 74.6
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 2.3e-117 426.0 300 74.3
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 3.0e-117 425.6 300 75.0
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 3.0e-117 425.6 300 75.0
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 5.1e-117 424.9 300 74.0
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 8.7e-117 424.1 300 73.7
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.6e-115 419.9 300 73.7
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 3.7e-115 418.7 300 74.3
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 6.3e-115 417.9 289 76.8
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 8.2e-115 417.5 300 72.7
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 1.4e-114 416.8 290 76.2
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.8e-114 416.4 300 74.0
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 3.1e-114 415.6 300 73.3
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 4.1e-114 415.2 300 74.0
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 4.1e-114 415.2 302 73.2
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 9.0e-114 414.1 300 72.3
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 9.0e-114 414.1 298 72.8
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.0e-113 412.9 298 73.8
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 4.5e-113 411.8 310 71.6
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 1.0e-112 410.6 300 73.3
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.7e-112 409.8 298 73.2
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 1.9e-111 406.4 300 71.0
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 3.2e-111 405.6 290 73.4
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 5.5e-111 404.8 298 73.2
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 7.2e-111 404.4 292 73.6
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 1.2e-110 403.7 298 71.8
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.6e-110 403.3 297 72.1
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.6e-110 403.3 297 72.1
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.6e-110 403.3 300 71.3
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.1e-110 402.9 303 72.9
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.6e-110 402.1 300 73.0
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 7.9e-110 401.0 294 72.4
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.4e-109 400.2 297 71.4
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.8e-109 399.8 301 71.4
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.3e-109 399.4 301 71.4
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 3.0e-109 399.1 301 71.4
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 3.9e-109 398.7 292 71.6
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 3.9e-109 398.7 300 71.3
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 6.7e-109 397.9 302 71.2
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 8.8e-109 397.5 301 71.1
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.5e-108 396.7 300 72.7
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.5e-108 396.7 282 74.5
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.5e-108 396.7 294 73.8
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 1.5e-108 396.7 298 71.5
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.0e-108 396.4 311 69.1
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 3.3e-108 395.6 297 71.0
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 7.4e-108 394.4 300 69.7
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.8e-107 392.5 297 71.0
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 8.2e-107 391.0 282 74.1
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 8.2e-107 391.0 298 70.8
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 8.2e-107 391.0 298 70.8
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 1.1e-106 390.6 288 73.3
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 2.4e-106 389.4 296 69.9
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 2.4e-106 389.4 300 70.0
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 5.3e-106 388.3 292 69.9
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 3.4e-105 385.6 269 75.1
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 5.9e-105 384.8 298 68.1
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 5.9e-105 384.8 297 70.4
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 7.7e-105 384.4 301 68.1
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 1.0e-104 384.0 295 69.5
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 1.3e-104 383.6 299 68.6
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.3e-104 383.6 286 72.7
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.3e-104 383.6 300 67.3
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 2.2e-104 382.9 298 68.5
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 3.8e-104 382.1 298 68.5
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 5.0e-104 381.7 300 67.3
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 8.5e-104 380.9 272 73.5
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 5.5e-103 378.3 272 73.2
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 5.5e-103 378.3 353 62.9
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.6e-102 376.7 299 66.2
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 1.6e-102 376.7 253 77.1
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 2.1e-102 376.3 298 66.4
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 2.1e-102 376.3 299 66.2
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.6e-102 375.6 272 72.4
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 6.1e-102 374.8 300 66.7
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 6.1e-102 374.8 266 73.3
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 7.9e-102 374.4 296 67.6
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 7.9e-102 374.4 298 66.4
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 1.0e-101 374.0 298 68.8
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.0e-101 374.0 302 68.5
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 1.8e-101 373.2 317 64.0
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 3.0e-101 372.5 299 67.2
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 5.1e-101 371.7 269 72.9
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 6.7e-101 371.3 269 72.5
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 8.8e-101 370.9 298 66.8
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 8.8e-101 370.9 298 65.8
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 2.0e-100 369.8 294 68.0
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 9.7e-100 367.5 251 75.7
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.3e-99 367.1 300 66.3
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.7e-99 366.7 298 66.8
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 1.7e-99 366.7 317 63.4
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.8e-99 365.9 302 66.9
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 3.7e-99 365.5 296 68.6
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 4.8e-99 365.2 302 66.6
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.8e-98 363.2 296 67.2
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.0e-96 357.5 302 65.6
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.8e-96 355.5 216 81.9
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 3.2e-95 352.4 266 69.9
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 4.2e-95 352.1 249 75.1
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 4.2e-95 352.1 261 72.4
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.2e-94 350.5 239 77.8
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 8.0e-94 347.8 260 73.8
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 1.0e-93 347.4 249 74.3
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.4e-93 347.1 249 74.3
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 3.0e-93 345.9 259 71.0
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.5e-92 343.6 299 63.5
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 7.4e-92 341.3 241 75.5
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 6.3e-91 338.2 228 78.5
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 1.8e-90 336.7 300 61.3
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 1.8e-90 336.7 248 73.0
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 7.0e-90 334.7 255 71.0
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 2.0e-89 333.2 312 60.3
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 3.3e-84 315.8 281 62.6
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.2e-83 313.2 298 59.1
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.8e-83 312.8 290 59.3
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 4.8e-83 312.0 298 59.1
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 8.3e-83 311.2 215 78.1
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 7.0e-82 308.1 224 74.6
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 2.0e-81 306.6 270 64.1
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 4.2e-79 298.9 298 57.0
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.0e-77 294.3 178 83.1
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 3.0e-77 292.7 224 72.3
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.0e-77 292.7 178 82.0
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 2.6e-76 289.7 227 67.8
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.3e-75 287.3 243 64.6
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 2.2e-75 286.6 246 64.6
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.7e-75 285.8 217 71.4
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 9.1e-74 281.2 290 54.8
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.3e-69 266.5 227 62.6
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 3.0e-69 266.2 269 58.0
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 6.8e-69 265.0 311 48.9
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.3e-67 260.8 304 50.0
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 1.4e-66 257.3 178 69.7
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 9.2e-66 254.6 263 55.9
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.7e-64 250.4 178 68.5
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 2.3e-61 240.0 248 54.0
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.9e-59 232.3 162 73.5
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 2.4e-58 229.9 138 84.8
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.1e-58 229.2 196 64.8
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 6.4e-51 205.3 255 52.2
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 2.3e-48 196.8 217 47.5
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 5.8e-44 182.2 170 62.4
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.9e-39 167.2 120 75.8
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.8e-38 163.3 158 59.5
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 2.8e-38 163.3 149 59.7
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.8e-29 134.0 82 81.7
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.6e-28 130.2 112 62.5
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 6.0e-25 119.0 64 87.5
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 9.6e-23 111.7 84 67.9
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 4.6e-17 92.8 66 69.7
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 3.8e-11 73.2 98 46.9
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.5e-11 72.4 98 46.9
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 9.3e-10 68.6 116 44.0
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.5e-07 60.5 38 78.9
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 4.3e-07 59.7 36 83.3


User provided reference genes

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