Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 6.2e-160 567.4 281 100.0
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 4.2e-100 368.6 193 93.8
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 1.2e-99 367.1 193 94.8
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 2.1e-99 366.3 193 95.3
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 3.6e-99 365.5 193 94.3
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 3.6e-99 365.5 193 93.3
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 6.1e-99 364.8 193 92.7
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 7.9e-99 364.4 193 93.3
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 1.0e-98 364.0 193 93.3
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 1.0e-98 364.0 193 93.3
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.4e-98 363.6 193 92.7
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 2.3e-98 362.8 193 93.3
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 3.0e-98 362.5 193 91.7
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 3.0e-98 362.5 193 92.2
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 3.9e-98 362.1 193 92.2
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 5.1e-98 361.7 193 92.2
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 5.1e-98 361.7 193 92.7
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 5.1e-98 361.7 193 92.7
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 6.7e-98 361.3 193 92.7
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 6.7e-98 361.3 193 92.2
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 6.7e-98 361.3 193 92.2
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 6.7e-98 361.3 193 91.7
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 8.8e-98 360.9 193 92.2
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 8.8e-98 360.9 193 92.7
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 1.1e-97 360.5 193 92.2
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 1.5e-97 360.1 193 92.2
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 1.5e-97 360.1 193 91.7
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 1.5e-97 360.1 193 91.7
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 1.5e-97 360.1 193 92.2
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 1.5e-97 360.1 193 92.2
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 1.5e-97 360.1 192 92.2
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.0e-97 359.8 193 91.2
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.0e-97 359.8 193 91.2
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 2.0e-97 359.8 193 92.2
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 2.0e-97 359.8 193 92.2
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 2.0e-97 359.8 193 92.2
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 2.6e-97 359.4 193 92.2
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 2.6e-97 359.4 193 92.2
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 2.6e-97 359.4 193 91.2
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 2.6e-97 359.4 193 91.7
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 3.3e-97 359.0 193 91.2
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 3.3e-97 359.0 193 92.2
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 3.3e-97 359.0 193 91.7
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 4.4e-97 358.6 193 91.7
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 5.7e-97 358.2 193 91.7
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 5.7e-97 358.2 193 91.7
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 5.7e-97 358.2 193 90.7
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 5.7e-97 358.2 193 91.2
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 7.4e-97 357.8 193 91.2
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 7.4e-97 357.8 193 91.2
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 9.7e-97 357.5 193 90.2
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 9.7e-97 357.5 193 91.7
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 9.7e-97 357.5 193 90.7
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 9.7e-97 357.5 193 91.2
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 1.3e-96 357.1 193 90.7
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 1.3e-96 357.1 193 91.2
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 1.3e-96 357.1 194 91.8
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 1.7e-96 356.7 193 90.7
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 1.7e-96 356.7 193 90.7
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 1.7e-96 356.7 193 90.7
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 1.7e-96 356.7 193 91.2
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 2.8e-96 355.9 193 90.7
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.8e-96 355.9 193 90.7
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 2.8e-96 355.9 186 94.6
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 3.7e-96 355.5 193 90.2
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 3.7e-96 355.5 193 91.2
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 3.7e-96 355.5 193 90.7
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 6.3e-96 354.8 193 89.6
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 6.3e-96 354.8 186 94.6
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 6.3e-96 354.8 193 90.7
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 8.2e-96 354.4 189 92.1
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 8.2e-96 354.4 193 90.2
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 1.1e-95 354.0 191 90.6
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 1.4e-95 353.6 187 93.6
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 1.4e-95 353.6 193 90.2
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 1.8e-95 353.2 193 90.2
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 2.4e-95 352.8 187 93.0
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 2.4e-95 352.8 196 90.3
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.1e-95 352.4 189 92.1
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 3.1e-95 352.4 193 89.1
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 5.3e-95 351.7 193 90.2
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 9.1e-95 350.9 186 93.0
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 9.1e-95 350.9 193 88.6
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 2.0e-94 349.7 185 93.0
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 3.4e-94 349.0 193 88.1
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 4.5e-94 348.6 193 88.6
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 4.5e-94 348.6 186 91.9
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 5.9e-94 348.2 187 90.9
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 5.9e-94 348.2 193 87.6
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 7.7e-94 347.8 186 91.9
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 1.0e-93 347.4 185 91.9
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 1.0e-93 347.4 185 92.4
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 1.3e-93 347.1 185 92.4
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 1.3e-93 347.1 189 90.5
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 1.7e-93 346.7 185 91.9
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 1.7e-93 346.7 185 91.9
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 1.7e-93 346.7 185 91.9
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 1.7e-93 346.7 188 89.9
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.7e-93 346.7 185 90.8
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 2.9e-93 345.9 186 91.4
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 5.0e-93 345.1 193 87.0
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 6.5e-93 344.7 185 91.4
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 6.5e-93 344.7 185 91.4
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 2.7e-91 339.3 193 85.5
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 2.7e-91 339.3 219 79.0
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 3.9e-90 335.5 193 85.5
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 8.8e-90 334.3 195 86.2
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 2.0e-89 333.2 193 86.5
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 5.7e-89 331.6 216 78.2
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 8.2e-88 327.8 193 85.0
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 1.8e-87 326.6 224 75.0
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 9.1e-87 324.3 193 79.3
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 2.9e-85 319.3 174 90.2
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 3.8e-85 318.9 193 78.2
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 6.1e-83 311.6 193 81.9
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 4.5e-78 295.4 193 79.8
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 7.7e-78 294.7 193 79.8
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 2.2e-77 293.1 193 79.8
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 2.2e-77 293.1 166 89.2
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 8.5e-77 291.2 193 77.7
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 5.5e-76 288.5 193 77.7
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 8.0e-75 284.6 186 80.1
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 8.0e-75 284.6 186 80.1
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 5.2e-74 282.0 186 79.6
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 2.0e-73 280.0 150 93.3
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 6.3e-72 275.0 191 72.8
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 4.0e-66 255.8 134 92.5
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 1.3e-61 240.7 180 66.1
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 1.7e-61 240.4 140 81.4
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 5.2e-58 228.8 124 90.3
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.8e-58 228.4 180 67.2
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 6.0e-54 215.3 148 76.4
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.0e-53 213.0 134 79.1
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.1e-52 211.1 126 84.9
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 8.3e-48 194.9 189 53.4
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 2.3e-45 186.8 186 58.1
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 8.9e-42 174.9 91 94.5
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 8.9e-42 174.9 171 51.5
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 4.6e-38 162.5 83 94.0
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.6e-38 162.5 123 70.7
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.4e-34 151.0 75 96.0
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.0e-34 149.4 75 94.7
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.9e-32 142.5 75 93.3
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.8e-26 124.0 70 87.1
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.5e-25 120.9 70 84.3
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 2.7e-22 110.2 58 89.7
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 1.4e-18 97.8 54 87.0
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.2e-17 94.7 73 65.8
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 4.5e-17 92.8 109 51.4
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 4.6e-14 82.8 47 80.9
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 4.6e-14 82.8 104 48.1
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 6.0e-14 82.4 42 90.5
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 1.0e-13 81.6 52 69.2
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 5.1e-13 79.3 90 52.2
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.5e-12 77.0 50 76.0
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 7.4e-12 75.5 40 92.5
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 2.8e-11 73.6 39 92.3
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 2.4e-10 70.5 37 91.9
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 2.4e-10 70.5 37 91.9
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 1.6e-06 57.8 39 74.4


User provided reference genes

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