Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 7.7e-166 587.0 287 100.0
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 7.0e-127 457.6 285 77.2
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 5.2e-122 441.4 290 72.8
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 8.3e-120 434.1 285 71.9
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.4e-119 433.3 287 72.8
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 4.1e-119 431.8 327 64.8
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 4.1e-119 431.8 327 64.8
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.4e-114 416.8 285 71.2
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 2.3e-114 416.0 283 69.6
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.5e-113 413.3 287 69.3
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 5.8e-113 411.4 285 68.1
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 8.3e-112 407.5 288 69.1
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 3.2e-111 405.6 283 70.3
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 9.2e-111 404.1 285 67.7
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.2e-110 403.7 285 67.4
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.6e-110 403.3 284 67.3
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 3.5e-110 402.1 287 67.9
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 4.6e-110 401.7 288 68.1
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 4.6e-110 401.7 289 67.5
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 7.8e-110 401.0 286 67.1
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 1.0e-109 400.6 297 67.0
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 1.3e-109 400.2 285 68.4
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.3e-109 400.2 283 67.5
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 1.7e-109 399.8 284 68.0
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 2.3e-109 399.4 287 68.6
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.0e-109 399.1 283 66.1
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 3.9e-109 398.7 283 69.6
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 6.6e-109 397.9 288 66.0
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 8.6e-109 397.5 288 68.4
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 8.6e-109 397.5 288 68.4
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 8.6e-109 397.5 286 66.4
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 1.5e-108 396.7 284 69.0
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.9e-108 396.4 286 66.4
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.9e-108 396.4 282 68.1
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 2.5e-108 396.0 287 64.8
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.5e-108 396.0 293 65.5
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 3.3e-108 395.6 288 66.7
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 3.3e-108 395.6 287 67.6
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 7.3e-108 394.4 288 65.3
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 7.3e-108 394.4 288 65.3
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 9.5e-108 394.0 286 66.1
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 9.5e-108 394.0 287 66.2
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.2e-107 393.7 286 66.4
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.6e-107 393.3 289 65.4
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.6e-107 393.3 287 67.9
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.1e-107 392.9 287 66.6
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 2.1e-107 392.9 285 67.4
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.8e-107 392.5 287 67.6
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 2.8e-107 392.5 283 67.1
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 2.8e-107 392.5 287 65.2
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 4.7e-107 391.7 287 66.2
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 6.2e-107 391.3 286 67.5
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 8.1e-107 391.0 289 66.1
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.4e-106 390.2 284 67.3
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 2.4e-106 389.4 287 65.5
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 3.1e-106 389.0 285 67.4
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 5.2e-106 388.3 287 65.9
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 8.9e-106 387.5 287 65.2
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 2.0e-105 386.3 286 65.7
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 2.6e-105 386.0 286 66.1
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 3.4e-105 385.6 323 59.4
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 5.8e-105 384.8 284 66.5
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.3e-104 383.6 284 66.5
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 1.3e-104 383.6 283 66.4
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.3e-104 383.6 286 65.4
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 6.4e-104 381.3 287 64.5
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.4e-103 380.2 323 61.6
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 1.4e-103 380.2 294 64.6
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 5.4e-103 378.3 286 65.4
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 2.7e-102 375.9 287 64.8
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 4.6e-102 375.2 288 64.2
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.3e-101 373.6 287 65.2
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 3.9e-101 372.1 287 64.5
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 8.7e-101 370.9 289 61.9
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.1e-100 370.5 284 65.8
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 2.5e-100 369.4 287 63.8
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 3.3e-100 369.0 286 63.6
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 4.3e-100 368.6 291 62.5
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 5.6e-100 368.2 286 63.3
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 5.6e-100 368.2 286 62.9
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 7.3e-100 367.9 287 63.8
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.6e-99 366.7 286 64.0
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 2.8e-99 365.9 288 63.2
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 2.8e-99 365.9 285 63.5
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 3.6e-99 365.5 286 64.0
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 1.1e-98 364.0 276 64.9
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 1.8e-98 363.2 286 62.2
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.8e-98 363.2 256 71.1
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.8e-98 363.2 289 62.6
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 2.4e-98 362.8 277 63.9
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 1.2e-97 360.5 288 62.2
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 2.0e-97 359.8 288 62.2
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 2.0e-97 359.8 254 70.5
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 4.4e-97 358.6 240 71.2
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 7.6e-97 357.8 253 68.4
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 9.9e-97 357.5 253 68.8
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 2.2e-96 356.3 283 63.3
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 2.9e-96 355.9 286 61.2
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 4.9e-96 355.1 254 66.9
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 8.4e-96 354.4 287 61.7
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 1.1e-95 354.0 288 60.8
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 4.6e-94 348.6 302 58.6
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.3e-93 346.3 286 60.8
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.3e-93 346.3 283 61.8
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.9e-92 343.2 256 68.4
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 3.6e-91 339.0 284 59.5
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 9.0e-90 334.3 225 72.0
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 9.0e-90 334.3 289 60.6
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 1.2e-89 334.0 286 58.4
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 9.6e-84 314.3 247 66.0
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 3.1e-82 309.3 258 60.5
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 1.7e-80 303.5 299 55.5
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 1.9e-79 300.1 283 54.8
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 3.5e-78 295.8 281 53.0
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.3e-77 293.9 208 69.7
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.9e-76 290.0 285 53.7
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 4.3e-76 288.9 263 55.1
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 4.5e-73 278.9 237 59.1
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.2e-70 270.8 248 54.0
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.1e-63 247.7 229 59.4
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 1.2e-62 244.2 168 68.5
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 2.3e-61 240.0 187 65.2
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 1.5e-49 200.7 270 41.9
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.0e-45 188.0 274 38.3
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 2.3e-45 186.8 299 40.5
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 1.3e-43 181.0 130 66.2
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 3.0e-37 159.8 150 54.7
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 1.7e-35 154.1 152 52.6
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 1.1e-34 151.4 150 52.7
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.1e-34 151.4 147 57.1
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 2.2e-32 143.7 118 58.5
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.5e-31 141.0 137 54.0
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 5.5e-31 139.0 263 31.2
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 1.2e-28 131.3 369 27.1
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 5.5e-23 112.5 93 60.2
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 6.1e-22 109.0 168 37.5
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 1.5e-20 104.4 93 60.2
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 2.0e-20 104.0 82 59.8
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 4.9e-19 99.4 115 46.1
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 5.9e-17 92.4 106 48.1
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 2.9e-16 90.1 72 58.3
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 4.3e-15 86.3 65 61.5
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 2.3e-13 80.5 62 53.2
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 4.0e-13 79.7 60 66.7
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.2e-12 78.2 213 31.9
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.6e-12 77.0 45 73.3
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.6e-12 77.0 45 71.1
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.4e-12 76.3 45 73.3
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.4e-12 76.3 45 73.3
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 7.5e-12 75.5 180 31.7
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 2.4e-10 70.5 109 42.2
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 4.1e-10 69.7 56 62.5
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 1.0e-08 65.1 43 67.4
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 1.7e-08 64.3 92 39.1
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 1.5e-07 61.2 93 40.9
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 3.3e-07 60.1 88 40.9
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 3.3e-07 60.1 88 40.9
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 4.7e-06 56.2 43 67.4


User provided reference genes

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