Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 3.3e-110 401.7 207 100.0
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 2.3e-63 246.1 205 61.5
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 7.5e-62 241.1 198 63.6
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 5.3e-60 235.0 205 59.5
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 3.5e-59 232.3 226 56.6
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.2e-58 229.6 204 56.4
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.0e-58 228.4 204 55.9
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 5.5e-57 224.9 202 55.4
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.2e-57 224.6 203 57.1
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.1e-56 221.5 203 53.7
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.8e-55 219.9 203 56.2
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 4.0e-55 218.8 200 56.0
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 5.2e-55 218.4 204 54.4
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 6.8e-55 218.0 200 55.0
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 8.8e-55 217.6 205 53.7
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 5.7e-54 214.9 199 56.8
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 1.7e-53 213.4 204 53.9
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.7e-53 213.4 204 53.9
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 4.8e-53 211.8 201 52.7
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.3e-53 211.5 204 53.4
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.8e-52 209.9 204 49.0
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.8e-52 209.9 204 52.5
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.4e-52 209.5 205 53.2
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 3.1e-52 209.1 204 52.9
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.2e-51 207.2 202 52.0
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 3.8e-50 202.2 201 51.2
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 7.2e-49 198.0 205 47.3
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.0e-47 194.1 207 48.8
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 1.0e-47 194.1 204 49.5
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 1.4e-47 193.7 207 50.2
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 4.0e-47 192.2 204 49.0
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 1.2e-46 190.7 205 47.3
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 1.5e-46 190.3 203 46.8
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 2.6e-46 189.5 200 48.5
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 2.6e-46 189.5 204 48.5
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.2e-45 186.4 204 47.5
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 2.2e-45 186.4 202 47.5
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 2.8e-45 186.0 204 46.1
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.8e-45 186.0 204 47.5
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.8e-45 186.0 204 47.5
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 3.7e-45 185.7 199 48.2
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.7e-45 185.7 204 48.5
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 8.3e-45 184.5 204 45.6
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.8e-44 183.3 205 45.4
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.8e-44 183.3 204 48.0
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 3.1e-44 182.6 202 44.1
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 3.1e-44 182.6 204 46.6
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 4.1e-44 182.2 200 45.0
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 4.1e-44 182.2 200 45.0
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 4.1e-44 182.2 204 45.6
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 4.1e-44 182.2 203 46.3
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 7.0e-44 181.4 205 47.3
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 7.0e-44 181.4 204 48.0
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 7.0e-44 181.4 206 45.6
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 9.2e-44 181.0 203 44.8
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 9.2e-44 181.0 203 48.3
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 1.2e-43 180.6 205 46.8
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 1.6e-43 180.3 204 43.6
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 1.6e-43 180.3 201 46.3
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.0e-42 177.6 199 43.2
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.0e-42 177.6 180 50.0
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.3e-42 177.2 198 47.0
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 1.7e-42 176.8 205 46.3
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 2.3e-42 176.4 206 44.7
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.9e-42 176.0 202 43.6
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.8e-42 175.6 202 45.5
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 3.8e-42 175.6 200 45.5
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 5.0e-42 175.3 208 44.2
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 5.0e-42 175.3 199 43.2
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.5e-41 173.7 205 45.4
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.5e-41 173.7 201 42.3
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 1.9e-41 173.3 205 44.9
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 2.5e-41 172.9 197 44.7
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 7.3e-41 171.4 202 43.1
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 9.5e-41 171.0 206 43.7
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.2e-40 170.6 205 44.9
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.6e-40 170.2 208 43.3
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 1.6e-40 170.2 206 42.7
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 2.1e-40 169.9 205 42.9
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 2.8e-40 169.5 201 41.8
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 2.8e-40 169.5 204 44.1
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 4.7e-40 168.7 205 44.4
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 4.7e-40 168.7 207 42.5
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 6.1e-40 168.3 200 43.0
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 2.3e-39 166.4 197 43.7
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 3.0e-39 166.0 207 41.5
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 4.0e-39 165.6 201 43.8
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 5.2e-39 165.2 200 41.5
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 6.8e-39 164.9 192 44.3
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.5e-38 163.7 204 43.6
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 2.6e-38 162.9 200 41.5
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 5.8e-38 161.8 200 42.0
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 5.8e-38 161.8 167 48.5
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 9.8e-38 161.0 200 42.0
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 9.8e-38 161.0 200 40.0
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.3e-37 160.6 200 42.0
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.7e-37 160.2 200 38.5
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 2.9e-37 159.5 200 41.0
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 3.7e-37 159.1 203 43.3
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 6.4e-37 158.3 199 41.2
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 8.3e-37 157.9 205 38.0
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 1.1e-36 157.5 200 41.5
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 1.1e-36 157.5 206 42.7
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 3.2e-36 156.0 200 38.5
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 4.1e-36 155.6 207 39.1
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 4.1e-36 155.6 200 40.0
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 5.4e-36 155.2 207 39.1
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 5.4e-36 155.2 205 40.0
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 9.2e-36 154.5 200 41.0
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 9.2e-36 154.5 201 38.3
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 9.2e-36 154.5 199 38.7
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 9.2e-36 154.5 201 39.8
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 2.0e-35 153.3 197 41.1
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.5e-35 152.5 161 47.2
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 7.8e-35 151.4 201 39.8
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 1.7e-34 150.2 207 39.6
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.7e-34 150.2 207 40.6
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 3.0e-34 149.4 161 46.6
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 3.9e-34 149.1 200 37.5
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 3.9e-34 149.1 200 37.5
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 6.6e-34 148.3 207 38.6
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 6.6e-34 148.3 207 39.6
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.5e-33 147.1 207 39.1
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 1.9e-33 146.7 207 39.1
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 4.3e-33 145.6 132 55.3
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 7.3e-33 144.8 188 37.8
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 1.6e-32 143.7 135 54.1
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 1.8e-31 140.2 192 41.1
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 4.0e-31 139.0 217 37.3
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 5.2e-31 138.7 165 45.5
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 6.8e-31 138.3 187 39.0
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 6.8e-31 138.3 187 39.0
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 6.8e-31 138.3 187 39.0
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 6.8e-31 138.3 192 41.1
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 8.9e-31 137.9 187 39.0
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 9.8e-30 134.4 203 37.9
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.3e-29 134.0 138 47.8
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 4.9e-29 132.1 208 37.0
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 6.4e-29 131.7 201 35.8
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 1.0e-26 124.4 171 40.4
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 7.3e-25 118.2 189 36.0
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 8.1e-24 114.8 199 36.2
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.2e-21 106.7 201 33.3
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 6.4e-21 105.1 118 44.9
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 1.4e-20 104.0 195 35.9
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 4.1e-20 102.4 126 43.7
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 6.0e-19 98.6 202 30.2
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.6e-18 95.1 106 52.8
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 6.6e-18 95.1 119 43.7
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.6e-16 90.5 196 33.2
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.1e-16 90.1 198 30.8
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.1e-16 90.1 210 31.4
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.4e-12 77.4 195 29.7
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 1.7e-10 70.5 43 76.7
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.0e-10 69.7 43 72.1
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.5e-09 66.6 43 69.8
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 7.3e-09 65.1 44 65.9
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 7.3e-09 65.1 44 65.9
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 9.6e-09 64.7 43 67.4
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.8e-07 60.5 43 60.5


User provided reference genes

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