Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 2.5e-47 191.8 100 100.0
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 3.1e-37 158.3 100 80.0
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.2e-35 152.1 101 78.2
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 4.9e-35 151.0 100 75.0
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 3.2e-34 148.3 101 75.2
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 3.2e-34 148.3 101 75.2
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 5.4e-34 147.5 100 78.0
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 5.4e-34 147.5 100 74.0
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 1.6e-33 146.0 100 74.0
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 1.6e-33 146.0 100 74.0
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 2.1e-33 145.6 101 76.2
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.0e-32 143.3 100 73.0
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 1.3e-32 142.9 100 74.0
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 2.3e-32 142.1 94 79.8
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 2.3e-32 142.1 100 73.0
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 2.3e-32 142.1 97 75.3
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 6.6e-32 140.6 101 73.3
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 1.1e-31 139.8 100 72.0
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 2.5e-31 138.7 100 71.0
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 4.3e-31 137.9 100 68.0
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 4.3e-31 137.9 103 70.9
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 7.3e-31 137.1 101 71.3
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 1.6e-30 136.0 97 71.1
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 2.1e-30 135.6 108 67.6
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 2.8e-30 135.2 101 72.3
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 5.3e-29 131.0 97 67.0
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 1.2e-28 129.8 101 69.3
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.5e-28 129.4 101 66.3
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 2.6e-28 128.6 103 68.0
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 4.4e-28 127.9 94 69.1
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 5.8e-28 127.5 95 69.5
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.3e-27 126.3 93 64.5
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 1.7e-27 125.9 94 68.1
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 1.7e-27 125.9 99 66.7
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 2.9e-27 125.2 95 68.4
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 2.9e-27 125.2 101 65.3
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 3.8e-27 124.8 102 67.6
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 4.9e-27 124.4 101 65.3
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 4.9e-27 124.4 101 66.3
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 4.9e-27 124.4 94 66.0
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.9e-27 124.4 95 68.4
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 8.4e-27 123.6 100 71.0
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 1.1e-26 123.2 93 67.7
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 1.1e-26 123.2 99 64.6
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 1.4e-26 122.9 102 63.7
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.9e-26 122.5 95 63.2
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 2.4e-26 122.1 95 65.3
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 2.4e-26 122.1 102 63.7
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 2.4e-26 122.1 101 63.4
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.4e-26 122.1 95 67.4
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 3.2e-26 121.7 99 64.6
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 5.4e-26 120.9 95 68.4
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 5.4e-26 120.9 92 67.4
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 7.1e-26 120.6 93 66.7
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 7.1e-26 120.6 94 63.8
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 9.3e-26 120.2 94 63.8
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 1.2e-25 119.8 95 67.4
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 1.2e-25 119.8 95 65.3
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 1.6e-25 119.4 92 66.3
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 1.6e-25 119.4 98 64.3
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 1.6e-25 119.4 97 67.0
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 2.1e-25 119.0 97 64.9
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 2.7e-25 118.6 95 66.3
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 3.5e-25 118.2 89 67.4
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 3.5e-25 118.2 99 63.6
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 3.5e-25 118.2 101 63.4
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 4.6e-25 117.9 98 63.3
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 4.6e-25 117.9 95 63.2
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 7.8e-25 117.1 95 64.2
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 7.8e-25 117.1 95 65.3
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 1.0e-24 116.7 95 64.2
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 1.0e-24 116.7 94 62.8
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 1.3e-24 116.3 94 60.6
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 1.7e-24 115.9 97 60.8
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 1.7e-24 115.9 92 63.0
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 1.7e-24 115.9 99 60.6
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 2.3e-24 115.5 100 62.0
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 2.3e-24 115.5 89 65.2
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 3.0e-24 115.2 100 59.0
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 3.9e-24 114.8 94 61.7
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 5.1e-24 114.4 92 63.0
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 6.6e-24 114.0 94 61.7
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 8.7e-24 113.6 100 61.0
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 8.7e-24 113.6 93 61.3
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 8.7e-24 113.6 101 61.4
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.9e-23 112.5 94 63.8
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.9e-23 112.5 94 62.8
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 3.3e-23 111.7 91 64.8
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 4.3e-23 111.3 95 63.2
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 5.6e-23 110.9 95 62.1
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 1.6e-22 109.4 75 73.3
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.8e-22 108.6 76 67.1
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 3.6e-22 108.2 77 72.7
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 3.6e-22 108.2 77 72.7
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 6.2e-22 107.5 93 60.2
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 8.1e-22 107.1 92 60.9
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 1.1e-21 106.7 92 60.9
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.1e-21 106.7 92 60.9
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.1e-21 106.7 92 60.9
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 1.8e-21 105.9 98 58.2
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 2.4e-21 105.5 91 61.5
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 2.4e-21 105.5 91 61.5
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 2.4e-21 105.5 91 61.5
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 2.4e-21 105.5 92 59.8
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 1.2e-20 103.2 91 58.2
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 1.5e-20 102.8 93 59.1
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 2.6e-20 102.1 95 58.9
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 7.6e-20 100.5 76 60.5
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 7.6e-20 100.5 94 59.6
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 7.6e-20 100.5 94 59.6
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 7.6e-20 100.5 138 50.7
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.7e-19 99.4 92 57.6
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 2.2e-19 99.0 93 57.0
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 2.2e-19 99.0 94 56.4
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 3.8e-19 98.2 93 57.0
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 3.8e-19 98.2 93 57.0
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 1.1e-18 96.7 75 68.0
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 2.4e-18 95.5 74 62.2
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 4.2e-18 94.7 63 76.2
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 2.7e-17 92.0 93 51.6
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 7.9e-17 90.5 84 54.8
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 1.0e-16 90.1 77 62.3
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 1.8e-16 89.4 78 64.1
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 6.7e-16 87.4 76 61.8
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 5.6e-15 84.3 104 49.0
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 7.4e-15 84.0 87 50.6
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 9.6e-15 83.6 104 48.1
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 9.6e-15 83.6 101 47.5
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 3.7e-14 81.6 91 47.3
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 3.7e-14 81.6 91 47.3
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 1.8e-13 79.3 87 49.4
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 2.4e-13 79.0 90 48.9
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 3.1e-13 78.6 96 47.9
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.7e-11 72.8 73 52.1
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 3.8e-11 71.6 64 53.1
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 3.8e-11 71.6 83 48.2
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 4.9e-11 71.2 82 51.2
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 1.1e-10 70.1 51 60.8
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 1.1e-10 70.1 79 53.2
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 1.9e-10 69.3 75 49.3
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 7.1e-10 67.4 80 50.0
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 1.6e-09 66.2 86 43.0
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 4.6e-09 64.7 55 58.2
AagrBONN_evm.TU.Sc2ySwM_362.1955 Anthoceros agrestis HOM05D005070 ORTHO05D005987 3.0e-08 62.0 83 41.0
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 1.9e-07 59.3 48 60.4
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 7.4e-07 57.4 34 85.3
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 7.4e-07 57.4 96 38.5
Pp3c7_6970 Physcomitrium patens HOM05D005070 ORTHO05D005987 7.4e-07 57.4 71 45.1


User provided reference genes

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