Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 2.9e-189 665.2 380 100.0
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 7.5e-84 315.1 389 54.2
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 4.5e-81 305.8 385 52.5
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 7.7e-81 305.1 383 52.0
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 1.2e-78 297.7 388 51.8
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 5.2e-77 292.4 390 50.3
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 3.4e-76 289.7 217 73.7
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 6.3e-75 285.4 388 52.1
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 1.4e-74 284.3 371 51.8
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 5.4e-74 282.3 383 52.5
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 3.5e-73 279.6 232 71.6
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 4.5e-73 279.3 217 71.9
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 7.7e-73 278.5 381 49.9
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 7.7e-73 278.5 381 50.9
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 7.7e-73 278.5 381 50.9
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 1.7e-72 277.3 222 71.2
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 3.8e-72 276.2 217 70.0
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 8.6e-72 275.0 385 50.1
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 8.6e-72 275.0 387 52.2
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.5e-71 273.5 218 71.1
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.5e-71 273.5 218 71.1
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 3.3e-71 273.1 237 66.7
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 3.6e-70 269.6 377 50.9
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 4.7e-70 269.2 183 79.2
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 4.7e-70 269.2 216 71.3
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 6.1e-70 268.9 381 50.9
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 8.0e-70 268.5 175 81.7
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 8.0e-70 268.5 383 49.1
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 8.0e-70 268.5 221 68.3
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 8.0e-70 268.5 387 49.4
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 1.4e-69 267.7 417 49.4
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.4e-69 267.7 219 68.9
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 2.3e-69 266.9 218 69.7
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 2.3e-69 266.9 173 81.5
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 2.3e-69 266.9 385 50.1
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 2.3e-69 266.9 383 49.3
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 5.2e-69 265.8 217 71.9
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.2e-68 264.6 165 85.5
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.5e-68 264.2 169 82.2
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 1.5e-68 264.2 217 69.1
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.0e-68 263.8 371 50.4
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 2.6e-68 263.5 257 61.1
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.4e-68 263.1 207 72.0
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 3.4e-68 263.1 391 47.6
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.4e-68 263.1 175 79.4
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 4.4e-68 262.7 202 72.3
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 5.7e-68 262.3 382 47.9
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 5.7e-68 262.3 204 73.0
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 5.7e-68 262.3 375 47.2
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 7.5e-68 261.9 394 49.5
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 9.8e-68 261.5 189 74.6
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 9.8e-68 261.5 169 81.7
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 1.3e-67 261.2 377 48.0
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.3e-67 261.2 168 81.5
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.3e-67 261.2 168 81.5
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 1.7e-67 260.8 169 82.2
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 1.7e-67 260.8 169 82.2
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 1.7e-67 260.8 387 48.3
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.7e-67 260.8 198 71.7
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.8e-67 260.0 183 78.7
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 2.8e-67 260.0 173 82.1
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 2.8e-67 260.0 381 48.0
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.7e-67 259.6 384 47.1
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 4.9e-67 259.2 387 50.1
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 4.9e-67 259.2 171 80.7
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 6.3e-67 258.8 381 48.3
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 1.1e-66 258.1 175 79.4
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.4e-66 257.7 380 47.1
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 1.4e-66 257.7 380 47.1
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.4e-66 257.7 169 81.1
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 3.1e-66 256.5 173 81.5
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 4.1e-66 256.1 418 47.4
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 5.4e-66 255.8 169 79.3
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 9.2e-66 255.0 214 68.7
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 1.6e-65 254.2 184 75.5
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 2.7e-65 253.4 216 67.1
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 2.7e-65 253.4 170 79.4
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 7.8e-65 251.9 170 78.8
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 1.3e-64 251.1 386 48.4
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 1.3e-64 251.1 170 78.8
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 2.3e-64 250.4 396 46.2
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 2.3e-64 250.4 170 77.6
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 2.3e-64 250.4 169 79.3
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.9e-64 249.6 384 46.4
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 6.6e-64 248.8 170 78.2
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 6.6e-64 248.8 161 82.0
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 1.1e-63 248.1 223 64.1
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 1.1e-63 248.1 169 79.9
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.5e-63 247.7 171 77.8
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 3.3e-63 246.5 176 76.1
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 7.3e-63 245.4 170 77.1
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 2.1e-62 243.8 223 65.9
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 3.6e-62 243.0 195 68.2
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 6.8e-61 238.8 173 76.3
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 3.4e-60 236.5 172 74.4
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 2.2e-59 233.8 173 75.7
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 3.2e-58 229.9 216 61.6
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 9.2e-58 228.4 216 63.4
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 1.6e-57 227.6 352 47.2
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 2.7e-57 226.9 216 63.0
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 2.7e-57 226.9 188 69.7
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 1.9e-55 220.7 261 55.9
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 9.5e-55 218.4 192 65.1
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 8.0e-54 215.3 200 64.5
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 3.1e-53 213.4 159 73.0
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.6e-52 210.3 366 44.3
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 4.4e-52 209.5 201 63.2
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 9.2e-50 201.8 170 65.9
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 1.9e-47 194.1 165 67.3
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 2.5e-47 193.7 165 66.1
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 2.5e-47 193.7 165 66.1
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 6.2e-46 189.1 220 55.5
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 1.5e-44 184.5 179 62.0
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.7e-43 181.0 283 45.9
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 1.7e-43 181.0 116 78.4
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.4e-42 177.9 208 55.8
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 5.4e-42 176.0 165 62.4
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 2.7e-41 173.7 386 38.3
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 4.7e-38 162.9 160 62.5
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.0e-36 157.5 163 58.3
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 1.9e-34 151.0 118 71.2
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 5.1e-32 142.9 128 65.6
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 1.6e-25 121.3 294 35.7
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.3e-24 118.2 294 37.1
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 2.3e-24 117.5 81 67.9
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 6.6e-24 115.9 73 79.5
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 8.7e-24 115.5 148 48.6
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 4.3e-23 113.2 68 76.5
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 5.6e-23 112.8 74 74.3
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 6.4e-19 99.4 170 41.8
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 2.5e-15 87.4 63 69.8
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.5e-15 87.4 69 71.0
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 6.2e-14 82.8 86 58.1
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 1.8e-13 81.3 108 52.8
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.0e-12 77.8 46 87.0
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 1.6e-09 68.2 49 81.6
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 7.4e-07 59.3 167 30.5


User provided reference genes

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