Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 3.3e-127 458.4 230 100.0
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 1.5e-74 283.5 231 64.5
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 1.3e-67 260.4 237 58.6
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 3.3e-66 255.8 214 59.8
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 9.5e-66 254.2 234 56.4
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 9.5e-66 254.2 171 69.6
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 1.2e-65 253.8 170 71.2
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 6.1e-65 251.5 171 70.8
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 1.0e-64 250.8 173 68.8
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 1.8e-64 250.0 171 68.4
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 3.0e-64 249.2 171 69.6
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 3.0e-64 249.2 172 70.9
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 4.0e-64 248.8 241 54.8
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 6.8e-64 248.1 171 69.0
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 1.2e-63 247.3 172 68.6
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 1.5e-63 246.9 223 57.4
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 2.0e-63 246.5 168 67.9
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 2.0e-63 246.5 172 68.6
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 2.0e-63 246.5 171 69.0
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 2.6e-63 246.1 227 57.7
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 5.7e-63 245.0 171 68.4
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 5.7e-63 245.0 167 69.5
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 9.8e-63 244.2 171 67.3
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 1.3e-62 243.8 172 68.6
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 1.7e-62 243.4 170 68.2
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 1.7e-62 243.4 171 67.8
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 1.7e-62 243.4 173 67.6
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 2.2e-62 243.0 173 67.6
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 2.8e-62 242.7 170 68.2
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 2.8e-62 242.7 171 68.4
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 2.8e-62 242.7 186 64.0
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 3.7e-62 242.3 170 67.1
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 3.7e-62 242.3 171 69.0
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 3.7e-62 242.3 171 66.7
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 3.7e-62 242.3 170 67.1
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 3.7e-62 242.3 224 58.0
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 3.7e-62 242.3 171 68.4
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 4.9e-62 241.9 171 65.5
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 6.3e-62 241.5 227 57.7
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 8.3e-62 241.1 170 67.1
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 1.1e-61 240.7 199 61.3
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 4.1e-61 238.8 167 67.1
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 9.2e-61 237.7 199 60.3
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 1.2e-60 237.3 170 66.5
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 1.6e-60 236.9 167 68.3
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 2.0e-60 236.5 175 62.3
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 2.7e-60 236.1 167 67.7
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 3.5e-60 235.7 172 65.7
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 5.9e-60 235.0 188 60.1
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 5.9e-60 235.0 170 65.9
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 5.9e-60 235.0 171 64.9
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 7.8e-60 234.6 157 70.1
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 1.3e-59 233.8 172 64.5
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 1.7e-59 233.4 175 62.3
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 2.3e-59 233.0 183 62.3
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 2.9e-59 232.6 170 64.7
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 3.9e-59 232.3 157 70.7
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 5.0e-59 231.9 173 62.4
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 6.6e-59 231.5 172 62.8
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 6.6e-59 231.5 168 63.7
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 1.1e-58 230.7 162 67.3
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.5e-58 230.3 186 60.8
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 1.9e-58 229.9 170 64.1
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 1.9e-58 229.9 173 61.3
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 1.9e-58 229.9 173 61.3
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.9e-58 229.9 186 60.8
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 2.5e-58 229.6 171 66.1
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 5.6e-58 228.4 170 63.5
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 5.6e-58 228.4 170 63.5
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 7.3e-58 228.0 230 52.2
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 9.5e-58 227.6 172 62.2
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 1.2e-57 227.3 224 50.9
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 2.8e-57 226.1 173 59.5
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 2.8e-57 226.1 167 61.7
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 3.6e-57 225.7 172 61.6
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 4.7e-57 225.3 173 62.4
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 4.7e-57 225.3 172 61.0
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 4.7e-57 225.3 172 65.1
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 6.1e-57 224.9 173 61.8
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 6.1e-57 224.9 173 61.8
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 6.1e-57 224.9 173 61.3
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 1.4e-56 223.8 171 62.6
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 1.4e-56 223.8 167 63.5
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 1.4e-56 223.8 162 66.0
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 1.4e-56 223.8 162 66.0
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 1.4e-56 223.8 167 62.3
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 1.8e-56 223.4 170 62.9
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 2.3e-56 223.0 167 60.5
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 2.3e-56 223.0 164 65.9
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 5.2e-56 221.9 173 60.1
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 6.8e-56 221.5 170 62.4
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 1.5e-55 220.3 162 65.4
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 3.4e-55 219.2 167 60.5
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 9.8e-55 217.6 165 63.6
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 1.3e-54 217.2 161 62.1
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 6.4e-54 214.9 167 60.5
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 1.4e-53 213.8 167 59.9
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 1.4e-53 213.8 194 55.7
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 1.9e-53 213.4 159 62.9
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 2.4e-53 213.0 161 60.2
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 3.2e-53 212.6 160 62.5
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 3.2e-53 212.6 154 66.2
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 6.0e-52 208.4 167 59.9
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 5.0e-51 205.3 144 68.8
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 7.3e-50 201.4 202 54.0
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 3.6e-49 199.1 155 58.7
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 3.4e-47 192.6 142 66.9
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 2.9e-46 189.5 140 67.9
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 1.1e-45 187.6 170 55.9
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 4.1e-45 185.7 121 72.7
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 3.0e-43 179.5 128 68.0
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 4.3e-42 175.6 138 62.3
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 1.2e-41 174.1 174 50.6
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 1.6e-41 173.7 160 50.6
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 2.8e-41 172.9 124 68.5
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 3.1e-40 169.5 118 64.4
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 6.8e-40 168.3 120 65.8
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 1.2e-39 167.5 120 65.0
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 4.4e-39 165.6 120 63.3
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 4.4e-39 165.6 120 63.3
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 9.9e-39 164.5 144 52.8
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 8.9e-32 141.4 141 54.6
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 2.4e-29 133.3 95 66.3
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 2.4e-24 116.7 89 62.9
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 4.0e-24 115.9 186 39.2
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 2.2e-22 110.2 115 53.0
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 3.8e-22 109.4 72 72.2
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 3.0e-19 99.8 69 68.1
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 1.5e-18 97.4 103 50.5
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 1.8e-08 63.9 36 77.8
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 2.4e-08 63.5 50 54.0
Cre11.g467679 Chlamydomonas reinhardtii HOM05D019738 ORTHO05D022279 2.9e-06 56.6 162 26.5


User provided reference genes

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