Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.4e-122 443.0 221 100.0
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 8.4e-96 354.0 220 78.2
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 4.3e-92 341.7 223 74.0
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 3.7e-91 338.6 224 74.1
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 1.6e-86 323.2 224 68.3
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 2.7e-86 322.4 226 69.9
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 6.7e-85 317.8 218 72.5
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.9e-84 316.2 216 70.8
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 4.3e-84 315.1 223 68.6
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 5.7e-84 314.7 224 67.9
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 1.3e-83 313.5 225 69.3
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 8.2e-83 310.8 219 69.4
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.1e-82 310.5 217 68.2
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.1e-82 310.5 217 68.7
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 1.1e-82 310.5 217 66.8
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 1.8e-82 309.7 226 66.8
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.8e-82 309.7 219 68.0
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 2.4e-82 309.3 217 68.2
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 2.4e-82 309.3 223 66.4
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 9.0e-82 307.4 219 67.6
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 9.0e-82 307.4 217 67.7
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 1.2e-81 307.0 221 67.9
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 2.0e-81 306.2 219 67.1
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.0e-81 306.2 217 68.2
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 4.5e-81 305.1 219 67.1
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 7.7e-81 304.3 218 66.5
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 7.7e-81 304.3 221 67.4
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.0e-80 303.9 218 67.4
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.2e-80 302.8 221 67.4
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 2.9e-80 302.4 216 66.2
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 3.8e-80 302.0 217 66.4
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 6.5e-80 301.2 219 66.2
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 8.5e-80 300.8 226 65.0
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 8.5e-80 300.8 219 66.2
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 1.1e-79 300.4 226 66.4
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.1e-79 300.4 218 67.0
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.4e-79 300.1 215 65.1
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 1.4e-79 300.1 218 66.5
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 1.9e-79 299.7 215 66.5
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 1.9e-79 299.7 230 65.7
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 1.9e-79 299.7 218 66.5
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 2.5e-79 299.3 216 67.6
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 4.2e-79 298.5 219 66.2
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 4.2e-79 298.5 217 65.4
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 5.5e-79 298.1 220 65.5
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 5.5e-79 298.1 216 66.2
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 5.5e-79 298.1 222 66.2
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 7.2e-79 297.7 218 66.5
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 9.4e-79 297.4 215 64.7
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.2e-78 297.0 206 68.4
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.2e-78 297.0 216 65.3
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.1e-78 296.2 218 65.1
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 2.7e-78 295.8 217 65.0
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 7.9e-78 294.3 219 62.6
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 7.9e-78 294.3 215 64.7
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 1.0e-77 293.9 217 65.9
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 1.0e-77 293.9 217 65.9
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 1.4e-77 293.5 216 63.4
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 1.8e-77 293.1 217 66.4
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 2.3e-77 292.7 229 65.5
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 3.0e-77 292.4 220 63.2
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 3.0e-77 292.4 218 65.1
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 3.0e-77 292.4 221 64.3
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 3.9e-77 292.0 221 63.3
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 3.9e-77 292.0 219 65.3
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 3.9e-77 292.0 216 63.4
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 5.1e-77 291.6 212 65.1
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 5.1e-77 291.6 222 64.0
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 6.7e-77 291.2 218 65.1
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 1.1e-76 290.4 218 64.7
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 1.5e-76 290.0 219 63.9
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 1.5e-76 290.0 219 64.4
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 1.5e-76 290.0 223 60.1
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 2.6e-76 289.3 221 62.0
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 2.6e-76 289.3 220 62.7
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 3.3e-76 288.9 217 64.1
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 4.3e-76 288.5 221 62.4
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 9.7e-76 287.3 219 60.7
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 9.7e-76 287.3 219 63.5
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 9.7e-76 287.3 218 62.8
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 9.7e-76 287.3 218 62.8
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 9.7e-76 287.3 215 64.2
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.3e-75 287.0 219 64.4
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.7e-75 286.6 219 64.4
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.7e-75 286.6 219 62.6
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 4.8e-75 285.0 220 61.8
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 6.3e-75 284.6 222 64.0
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 8.2e-75 284.3 219 63.5
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 8.2e-75 284.3 219 63.5
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 1.1e-74 283.9 218 61.9
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.1e-74 283.9 229 57.2
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 1.8e-74 283.1 213 63.4
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.4e-74 282.7 206 66.0
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 4.1e-74 282.0 218 62.8
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 5.3e-74 281.6 219 63.0
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 6.9e-74 281.2 205 64.9
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 6.9e-74 281.2 218 62.8
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.2e-73 280.4 206 65.5
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 1.2e-73 280.4 222 62.2
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 1.5e-73 280.0 210 64.3
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 1.5e-73 280.0 223 59.6
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.0e-73 279.6 221 58.8
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.4e-73 278.9 220 57.3
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 5.9e-73 278.1 243 58.4
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 1.7e-72 276.6 207 59.9
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 2.2e-72 276.2 221 60.2
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.2e-72 276.2 206 65.0
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 6.5e-72 274.6 220 59.5
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 1.4e-71 273.5 220 59.5
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.4e-71 273.5 229 55.0
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 1.4e-71 273.5 229 55.0
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 4.7e-70 268.5 311 49.5
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 1.5e-68 263.5 219 60.3
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 4.4e-68 261.9 318 46.2
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 4.8e-67 258.5 216 59.3
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 8.2e-67 257.7 219 56.6
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.4e-66 256.1 180 72.2
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 3.1e-66 255.8 219 59.4
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.2e-65 253.8 217 56.2
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 3.5e-65 252.3 217 58.5
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 3.2e-63 245.7 169 71.0
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 4.7e-62 241.9 218 54.1
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 8.8e-61 237.7 350 40.3
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 2.6e-60 236.1 152 76.3
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 9.7e-60 234.2 221 53.4
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 1.3e-56 223.8 152 71.1
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 1.7e-56 223.4 151 70.9
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 1.2e-52 210.7 151 67.5
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 4.8e-51 205.3 164 58.5
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 2.5e-47 193.0 130 70.8
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 2.7e-46 189.5 124 73.4
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 9.8e-44 181.0 134 63.4
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 2.2e-43 179.9 107 80.4
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 1.0e-40 171.0 186 50.5
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 2.3e-40 169.9 110 71.8
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 2.3e-40 169.9 110 71.8
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 3.3e-39 166.0 99 77.8
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 1.7e-35 153.7 217 41.9
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 8.3e-35 151.4 95 73.7
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 5.9e-33 145.2 202 37.6
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 4.7e-30 135.6 111 59.5
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 1.4e-29 134.0 111 57.7
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 1.9e-26 123.6 111 53.2
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 3.2e-26 122.9 115 55.7
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.2e-25 120.9 82 69.5
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 2.3e-24 116.7 138 43.5
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.6e-20 103.2 101 51.5
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 2.9e-19 99.8 81 61.7
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 1.2e-12 77.8 122 40.2
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 2.0e-12 77.0 57 63.2
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.6e-09 67.4 47 66.0
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 3.0e-08 63.2 75 46.7
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 4.7e-06 55.8 48 56.2


User provided reference genes

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