Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 2.0e-83 312.4 158 100.0
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 8.9e-15 84.3 115 47.0
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 1.3e-13 80.5 110 45.5
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 2.2e-13 79.7 114 43.9
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 4.9e-13 78.6 87 54.0
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 8.3e-13 77.8 89 50.6
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 1.1e-12 77.4 96 51.0
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 1.9e-12 76.6 116 47.4
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 2.4e-12 76.3 84 52.4
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 3.2e-12 75.9 66 57.6
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 3.2e-12 75.9 97 44.3
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.1e-12 74.7 86 47.7
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 7.1e-12 74.7 70 55.7
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 7.1e-12 74.7 60 60.0
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.2e-11 73.9 83 50.6
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.6e-11 73.6 84 51.2
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.6e-11 73.6 90 44.4
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.6e-11 73.6 81 44.4
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.6e-11 73.6 83 50.6
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.7e-11 72.8 83 49.4
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 3.5e-11 72.4 86 44.2
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.6e-11 72.0 92 46.7
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 4.6e-11 72.0 91 41.8
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 6.0e-11 71.6 76 52.6
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 6.0e-11 71.6 73 53.4
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 6.0e-11 71.6 63 52.4
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 1.0e-10 70.9 65 58.5
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 1.0e-10 70.9 88 51.1
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 1.0e-10 70.9 69 53.6
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.0e-10 70.9 80 48.8
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.3e-10 70.5 82 53.7
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 1.3e-10 70.5 114 38.6
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.7e-10 70.1 70 50.0
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 1.7e-10 70.1 53 60.4
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 2.3e-10 69.7 69 53.6
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 3.0e-10 69.3 103 43.7
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 3.0e-10 69.3 47 61.7
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 3.0e-10 69.3 57 56.1
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 3.0e-10 69.3 65 53.8
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 3.0e-10 69.3 61 52.5
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 3.0e-10 69.3 67 53.7
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 3.9e-10 68.9 80 50.0
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 3.9e-10 68.9 61 50.8
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 5.1e-10 68.6 64 48.4
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 5.1e-10 68.6 59 59.3
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 5.1e-10 68.6 120 42.5
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 6.6e-10 68.2 54 55.6
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.6e-10 68.2 63 58.7
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 6.6e-10 68.2 51 60.8
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 8.6e-10 67.8 55 52.7
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 8.6e-10 67.8 59 49.2
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 8.6e-10 67.8 48 58.3
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.1e-09 67.4 77 45.5
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.1e-09 67.4 68 54.4
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.1e-09 67.4 106 41.5
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.1e-09 67.4 91 45.1
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 1.1e-09 67.4 68 48.5
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 1.9e-09 66.6 93 43.0
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.9e-09 66.6 69 53.6
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.9e-09 66.6 46 60.9
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 1.9e-09 66.6 72 51.4
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 1.9e-09 66.6 85 41.2
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 1.9e-09 66.6 108 45.4
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 2.5e-09 66.2 55 56.4
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 2.5e-09 66.2 84 45.2
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 3.3e-09 65.9 77 49.4
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 3.3e-09 65.9 92 40.2
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.3e-09 65.9 48 58.3
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 3.3e-09 65.9 108 46.3
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 4.3e-09 65.5 59 57.6
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.3e-09 65.5 63 54.0
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 4.3e-09 65.5 85 45.9
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 4.3e-09 65.5 71 50.7
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 4.3e-09 65.5 106 40.6
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 4.3e-09 65.5 62 50.0
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 4.3e-09 65.5 81 42.0
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 5.6e-09 65.1 70 50.0
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.3e-09 64.7 68 48.5
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 7.3e-09 64.7 90 40.0
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 7.3e-09 64.7 90 40.0
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 7.3e-09 64.7 59 54.2
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 7.3e-09 64.7 59 54.2
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 7.3e-09 64.7 83 41.0
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 9.5e-09 64.3 46 63.0
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 9.5e-09 64.3 63 50.8
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 9.5e-09 64.3 50 56.0
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 1.2e-08 63.9 74 43.2
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 1.2e-08 63.9 46 56.5
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 1.6e-08 63.5 46 63.0
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.6e-08 63.5 98 39.8
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 2.1e-08 63.2 61 49.2
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 2.1e-08 63.2 46 58.7
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.1e-08 63.2 61 50.8
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.1e-08 63.2 61 50.8
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 2.8e-08 62.8 53 56.6
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 2.8e-08 62.8 109 39.4
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 3.6e-08 62.4 61 49.2
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 3.6e-08 62.4 60 51.7
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 3.6e-08 62.4 43 62.8
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 4.7e-08 62.0 60 55.0
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 4.7e-08 62.0 60 55.0
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 4.7e-08 62.0 43 69.8
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 4.7e-08 62.0 57 59.6
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 6.2e-08 61.6 65 50.8
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 8.1e-08 61.2 43 58.1
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 8.1e-08 61.2 60 50.0
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 8.1e-08 61.2 88 44.3
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 1.1e-07 60.8 59 54.2
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 1.1e-07 60.8 81 40.7
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.1e-07 60.8 81 40.7
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.1e-07 60.8 50 56.0
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 1.1e-07 60.8 59 54.2
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 1.1e-07 60.8 59 50.8
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.4e-07 60.5 43 60.5
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 1.4e-07 60.5 106 39.6
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 1.4e-07 60.5 69 44.9
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.8e-07 60.1 65 47.7
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.8e-07 60.1 61 49.2
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 1.8e-07 60.1 46 54.3
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 1.8e-07 60.1 46 54.3
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 2.3e-07 59.7 59 52.5
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 2.3e-07 59.7 86 38.4
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 2.3e-07 59.7 49 59.2
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.1e-07 59.3 81 39.5
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.1e-07 59.3 48 54.2
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 4.0e-07 58.9 47 57.4
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 4.0e-07 58.9 59 50.8
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 6.8e-07 58.2 47 51.1
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 8.9e-07 57.8 54 51.9
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.5e-06 57.0 59 40.7
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 1.5e-06 57.0 46 52.2
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 2.0e-06 56.6 45 46.7
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 2.0e-06 56.6 48 45.8
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 2.6e-06 56.2 52 53.8
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 3.4e-06 55.8 73 46.6
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 4.4e-06 55.5 60 43.3
Os06g0551500 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 5.8e-06 55.1 41 61.0
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 9.9e-06 54.3 97 38.1


User provided reference genes

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