Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g678 Utricularia gibba HOM05D002585 ORTHO05D002917 1.4e-84 316.2 161 100.0
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 1.8e-47 193.0 143 68.5
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 2.7e-43 179.1 142 62.7
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 1.3e-42 176.8 142 60.6
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 8.7e-42 174.1 143 60.1
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 8.7e-42 174.1 143 60.1
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 4.3e-41 171.8 137 62.0
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 9.6e-41 170.6 139 59.0
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 3.7e-40 168.7 143 55.9
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 3.7e-40 168.7 138 60.1
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 1.1e-39 167.2 137 60.6
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 1.4e-39 166.8 137 57.7
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 2.4e-39 166.0 139 57.6
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 2.4e-39 166.0 139 57.6
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 3.1e-39 165.6 139 57.6
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 3.1e-39 165.6 146 56.8
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 4.0e-39 165.2 137 59.1
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 5.3e-39 164.9 137 58.4
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 5.3e-39 164.9 143 57.3
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 9.0e-39 164.1 143 56.6
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 9.0e-39 164.1 146 56.2
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 9.0e-39 164.1 138 58.0
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 1.2e-38 163.7 152 53.3
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 1.2e-38 163.7 152 53.3
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 1.2e-38 163.7 152 53.3
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 1.5e-38 163.3 139 56.1
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 1.5e-38 163.3 137 57.7
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.0e-38 162.9 143 56.6
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 2.0e-38 162.9 140 56.4
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 2.0e-38 162.9 139 57.6
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 2.6e-38 162.5 137 56.9
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 2.6e-38 162.5 137 57.7
Lalb_Chr02g0155491 Lupinus albus HOM05D002585 ORTHO05D002917 4.5e-38 161.8 146 56.2
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 4.5e-38 161.8 144 60.4
Sc20g0005720 Simmondsia chinensis HOM05D002585 ORTHO05D002917 5.8e-38 161.4 140 57.1
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 7.6e-38 161.0 145 56.6
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 1.0e-37 160.6 140 57.9
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.0e-37 160.6 140 57.9
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 1.0e-37 160.6 143 55.9
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 1.3e-37 160.2 140 54.3
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 1.3e-37 160.2 140 57.1
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 1.3e-37 160.2 140 55.7
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.7e-37 159.8 143 55.2
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 2.2e-37 159.5 137 56.2
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 2.9e-37 159.1 137 53.3
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.8e-37 158.7 138 54.3
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 3.8e-37 158.7 143 56.6
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 3.8e-37 158.7 138 56.5
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 4.9e-37 158.3 141 54.6
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 4.9e-37 158.3 141 54.6
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 4.9e-37 158.3 141 54.6
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 4.9e-37 158.3 141 54.6
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 4.9e-37 158.3 146 53.4
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 4.9e-37 158.3 140 55.0
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 4.9e-37 158.3 138 54.3
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 6.5e-37 157.9 143 53.8
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 6.5e-37 157.9 151 53.0
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 6.5e-37 157.9 138 56.5
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 8.4e-37 157.5 143 54.5
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 1.1e-36 157.1 137 55.5
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 1.4e-36 156.8 141 56.7
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 2.5e-36 156.0 138 55.8
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 3.2e-36 155.6 137 56.9
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 3.2e-36 155.6 137 56.9
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 3.2e-36 155.6 137 56.9
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 3.2e-36 155.6 137 54.7
Lalb_Chr21g0315151 Lupinus albus HOM05D002585 ORTHO05D002917 4.2e-36 155.2 137 54.0
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 4.2e-36 155.2 140 55.0
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 7.1e-36 154.5 139 56.1
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 7.1e-36 154.5 137 53.3
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 7.1e-36 154.5 140 55.0
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 1.2e-35 153.7 137 52.6
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 1.6e-35 153.3 144 54.9
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 1.6e-35 153.3 140 54.3
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 2.1e-35 152.9 137 52.6
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 2.1e-35 152.9 141 54.6
Medtr1g062710 Medicago truncatula HOM05D002585 ORTHO05D002917 2.1e-35 152.9 139 51.8
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 2.1e-35 152.9 167 49.7
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 2.7e-35 152.5 137 52.6
MD13G1277900 Malus domestica HOM05D002585 ORTHO05D002917 2.7e-35 152.5 140 52.1
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 3.5e-35 152.1 143 51.7
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 4.6e-35 151.8 137 52.6
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 6.0e-35 151.4 140 54.3
Lj5g0007956 Lotus japonicus HOM05D002585 ORTHO05D002917 1.0e-34 150.6 137 54.0
Ca_05180_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 1.3e-34 150.2 153 47.7
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 2.3e-34 149.4 141 53.2
Glyma.10G060100 Glycine max HOM05D002585 ORTHO05D002917 8.7e-34 147.5 142 53.5
VMungo0720G0437 Vigna mungo HOM05D002585 ORTHO05D002917 1.1e-33 147.1 150 50.7
HanXRQChr05g0144531 Helianthus annuus HOM05D002585 ORTHO05D002917 1.5e-33 146.7 139 57.6
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 1.9e-33 146.4 130 55.4
Psat6g074480 Pisum sativum HOM05D002585 ORTHO05D002917 1.9e-33 146.4 137 51.1
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 3.3e-33 145.6 129 55.0
VMungo0720G1363 Vigna mungo HOM05D002585 ORTHO05D002917 3.3e-33 145.6 146 52.7
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 4.3e-33 145.2 134 53.0
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 4.3e-33 145.2 140 53.6
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 9.7e-33 144.1 139 50.4
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 9.7e-33 144.1 142 52.8
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 1.6e-32 143.3 140 52.9
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 3.7e-32 142.1 144 45.8
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 6.3e-32 141.4 138 49.3
Peaxi162Scf00529g00035 Petunia axillaris HOM05D002585 ORTHO05D002917 6.3e-32 141.4 149 47.7
Phvul.007G152300 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 8.2e-32 141.0 146 50.0
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 1.8e-31 139.8 140 51.4
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 2.4e-31 139.4 143 51.0
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 4.1e-31 138.7 150 46.0
Os10g0456500 Oryza sativa ssp. japonica HOM05D002585 ORTHO05D002917 4.1e-31 138.7 140 51.4
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 5.3e-31 138.3 140 50.0
Nitab4.5_0008230g0010 Nicotiana tabacum HOM05D002585 ORTHO05D002917 6.9e-31 137.9 142 50.7
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 6.9e-31 137.9 135 46.7
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 2.0e-30 136.3 140 50.0
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 2.2e-29 132.9 146 50.0
Peaxi162Scf00247g00111 Petunia axillaris HOM05D002585 ORTHO05D002917 8.5e-29 131.0 140 49.3
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 1.4e-28 130.2 138 50.7
Solyc01g056430.2 Solanum lycopersicum HOM05D002585 ORTHO05D002917 2.5e-28 129.4 138 47.8
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 4.2e-28 128.6 138 49.3
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 7.2e-28 127.9 136 46.3
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 1.6e-27 126.7 121 51.2
PGSC0003DMG400019014 Solanum tuberosum HOM05D002585 ORTHO05D002917 2.1e-27 126.3 144 45.1
SHI27836 Sapria himalayana HOM05D002585 ORTHO05D002917 2.7e-27 125.9 140 46.4
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 4.6e-27 125.2 140 49.3
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.8e-26 123.2 140 42.9
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.3e-26 122.9 130 46.2
Sopen01g025510 Solanum pennellii HOM05D002585 ORTHO05D002917 3.0e-26 122.5 130 47.7
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 3.9e-26 122.1 140 42.1
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 6.7e-26 121.3 87 64.4
Peaxi162Scf00780g01013 Petunia axillaris HOM05D002585 ORTHO05D002917 6.7e-26 121.3 144 46.5
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.1e-25 120.6 169 43.2
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 1.9e-25 119.8 143 46.2
TPR.G21013 Trifolium pratense HOM05D002585 ORTHO05D002917 1.9e-25 119.8 116 50.0
Nitab4.5_0008265g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 4.3e-25 118.6 170 41.2
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 4.1e-23 112.1 103 55.3
TPR.G21005 Trifolium pratense HOM05D002585 ORTHO05D002917 1.2e-22 110.5 88 60.2
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 3.4e-22 109.0 88 61.4
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.4e-22 109.0 138 47.8
Lj3C991T4 Lonicera japonica HOM05D002585 ORTHO05D002917 4.5e-22 108.6 89 56.2
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 4.5e-22 108.6 88 56.8
Nitab4.5_0003945g0140 Nicotiana tabacum HOM05D002585 ORTHO05D002917 5.9e-22 108.2 143 43.4
PGSC0003DMG401009595 Solanum tuberosum HOM05D002585 ORTHO05D002917 1.0e-21 107.5 122 45.9
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 2.2e-21 106.3 90 57.8
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 1.4e-20 103.6 103 48.5
Pp3c21_9940 Physcomitrium patens HOM05D002585 ORTHO05D002917 2.5e-20 102.8 140 35.0
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 3.2e-20 102.4 93 54.8
CBR_g37575 Chara braunii HOM05D002585 ORTHO05D002917 4.2e-20 102.1 137 39.4
Pp3c22_1270 Physcomitrium patens HOM05D002585 ORTHO05D002917 2.1e-19 99.8 140 35.0
Nitab4.5_0000217g0060 Nicotiana tabacum HOM05D002585 ORTHO05D002917 7.4e-17 91.3 92 47.8
Solyc06g011290.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 7.4e-17 91.3 98 48.0
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 4.8e-16 88.6 92 50.0
CBR_g51531 Chara braunii HOM05D002585 ORTHO05D002917 7.7e-14 81.3 92 46.7
Solyc01g056390.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.9e-10 68.9 96 40.6
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 5.7e-09 65.1 71 43.7


User provided reference genes

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