Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 1.0e-99 366.7 177 100.0
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 1.7e-70 269.6 152 82.2
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 1.7e-70 269.6 152 82.2
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.2e-70 269.2 152 80.9
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 4.9e-70 268.1 151 79.5
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 8.3e-70 267.3 152 79.6
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 1.1e-69 266.9 148 82.4
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.4e-69 266.5 151 78.8
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.9e-69 266.2 152 79.6
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 3.2e-69 265.4 153 79.7
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 4.6e-68 261.5 152 79.6
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 4.6e-68 261.5 153 77.8
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 4.6e-68 261.5 158 76.6
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 6.0e-68 261.2 153 79.7
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 6.0e-68 261.2 152 79.6
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 7.8e-68 260.8 152 78.9
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.0e-67 260.4 152 78.9
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 1.7e-67 259.6 152 77.6
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 3.9e-67 258.5 161 75.2
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 5.0e-67 258.1 152 78.3
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.5e-66 256.5 152 77.6
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 1.5e-66 256.5 153 77.8
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 2.5e-66 255.8 152 75.0
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 3.3e-66 255.4 152 75.7
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 4.3e-66 255.0 152 77.0
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 4.3e-66 255.0 153 77.1
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 5.6e-66 254.6 148 78.4
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 5.6e-66 254.6 152 76.3
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 5.6e-66 254.6 152 77.6
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 5.6e-66 254.6 147 78.9
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 5.6e-66 254.6 147 78.9
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 9.5e-66 253.8 153 77.8
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 9.5e-66 253.8 149 75.8
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.6e-65 253.1 152 76.3
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.6e-65 253.1 146 78.1
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 2.1e-65 252.7 152 74.3
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 2.1e-65 252.7 151 76.2
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 2.8e-65 252.3 172 70.3
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 6.2e-65 251.1 153 77.1
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 3.1e-64 248.8 152 73.7
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 4.0e-64 248.4 141 80.9
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 4.0e-64 248.4 152 74.3
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 5.2e-64 248.1 152 73.7
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 8.9e-64 247.3 141 80.1
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 8.9e-64 247.3 152 73.7
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 1.2e-63 246.9 145 77.9
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 2.0e-63 246.1 152 72.4
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 2.6e-63 245.7 152 75.0
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 3.4e-63 245.4 148 75.0
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 9.8e-63 243.8 149 74.5
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.3e-62 243.4 139 79.1
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 1.3e-62 243.4 139 80.6
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 1.3e-62 243.4 146 76.7
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.7e-62 243.0 143 77.6
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 2.2e-62 242.7 152 73.0
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 2.9e-62 242.3 152 72.4
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 2.9e-62 242.3 152 71.7
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 3.7e-62 241.9 157 68.8
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 6.4e-62 241.1 152 71.7
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 8.3e-62 240.7 152 71.1
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 8.3e-62 240.7 141 78.0
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.4e-61 240.0 152 71.7
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 1.4e-61 240.0 143 77.6
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.9e-61 239.6 152 72.4
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 2.4e-61 239.2 152 71.7
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 2.4e-61 239.2 152 70.4
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 2.4e-61 239.2 152 70.4
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 2.4e-61 239.2 152 70.4
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 4.1e-61 238.4 145 75.9
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 4.1e-61 238.4 152 71.1
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 7.1e-61 237.7 145 75.2
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 7.1e-61 237.7 145 75.2
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 1.2e-60 236.9 145 75.2
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 1.2e-60 236.9 152 69.1
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.6e-60 236.5 152 73.0
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 1.6e-60 236.5 152 70.4
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.6e-60 236.5 152 69.7
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 1.6e-60 236.5 152 69.1
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.6e-60 236.5 152 69.1
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.6e-60 236.5 143 75.5
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 2.7e-60 235.7 152 73.0
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 4.6e-60 235.0 152 69.7
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 6.0e-60 234.6 152 69.1
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 1.0e-59 233.8 142 75.4
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 1.0e-59 233.8 143 74.8
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 1.0e-59 233.8 143 74.8
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 1.3e-59 233.4 152 73.7
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.3e-59 233.4 155 69.7
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 3.0e-59 232.3 149 73.2
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 3.0e-59 232.3 147 68.7
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 8.6e-59 230.7 142 73.9
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 1.9e-58 229.6 142 73.2
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.9e-58 229.6 143 72.7
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.3e-58 228.8 144 71.5
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 5.6e-58 228.0 138 74.6
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 9.5e-58 227.3 144 70.8
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 2.1e-57 226.1 143 72.0
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 2.1e-57 226.1 143 70.6
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 8.1e-57 224.2 150 70.0
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 8.1e-57 224.2 142 71.1
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 1.4e-56 223.4 143 72.7
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 1.8e-56 223.0 148 70.9
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 4.0e-56 221.9 158 66.5
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 4.0e-56 221.9 143 69.9
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 8.9e-56 220.7 139 70.5
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 5.8e-55 218.0 147 69.4
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.3e-54 216.9 124 80.6
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 2.2e-54 216.1 142 68.3
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 3.7e-54 215.3 154 66.9
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.4e-53 213.4 139 69.8
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 4.1e-53 211.8 144 65.3
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 5.4e-53 211.5 136 69.1
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 1.2e-52 210.3 155 65.8
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 3.0e-51 205.7 144 68.1
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.8e-49 199.1 109 82.6
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 5.4e-45 184.9 152 59.2
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 1.5e-42 176.8 152 53.9
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 9.6e-42 174.1 152 53.3
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.6e-41 172.2 121 66.9
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.1e-40 169.1 121 66.1
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 4.9e-38 161.8 103 69.9
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 4.9e-38 161.8 153 56.2
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 1.6e-36 156.8 123 57.7
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.9e-34 149.8 149 51.7
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 9.6e-34 147.5 123 56.9
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 4.8e-33 145.2 97 70.1
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 2.6e-31 139.4 152 50.0
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 2.6e-31 139.4 153 48.4
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 5.8e-31 138.3 90 73.3
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 7.6e-31 137.9 153 49.0
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.3e-30 137.1 140 53.6
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 3.8e-30 135.6 153 47.7
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.1e-28 129.8 165 46.7
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 3.5e-28 129.0 165 46.7
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 3.5e-28 129.0 154 44.2
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.2e-23 114.0 67 79.1
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 2.7e-20 102.8 128 40.6
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 6.9e-16 88.2 61 63.9
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 1.1e-13 80.9 53 67.9
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 2.1e-12 76.6 119 35.3
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 1.0e-11 74.3 62 61.3
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.5e-10 69.7 81 45.7
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 9.7e-10 67.8 48 58.3
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 2.0e-07 60.1 42 66.7
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 7.7e-07 58.2 46 52.2


User provided reference genes

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