Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 8.7e-117 423.7 222 100.0
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 1.4e-93 346.7 219 78.5
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 5.1e-93 344.7 205 80.5
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 6.1e-86 321.2 211 75.8
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 5.1e-85 318.2 219 73.1
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 8.2e-83 310.8 206 73.3
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 4.1e-82 308.5 206 72.8
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 7.0e-82 307.8 204 74.5
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 3.5e-81 305.4 213 71.4
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 7.7e-81 304.3 206 72.3
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 2.2e-80 302.8 211 70.6
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 2.9e-80 302.4 206 70.4
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 2.9e-80 302.4 220 70.5
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 5.0e-80 301.6 208 70.7
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.9e-79 299.7 212 71.2
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 2.5e-79 299.3 206 69.9
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 3.2e-79 298.9 206 67.5
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 4.2e-79 298.5 212 70.8
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 4.2e-79 298.5 206 67.5
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 5.5e-79 298.1 212 70.3
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 7.2e-79 297.7 211 71.6
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 9.4e-79 297.4 211 71.1
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 9.4e-79 297.4 211 69.7
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 1.6e-78 296.6 210 69.5
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 2.1e-78 296.2 206 67.0
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 3.6e-78 295.4 211 67.8
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 8.0e-78 294.3 210 69.0
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 1.0e-77 293.9 218 68.8
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.0e-77 293.9 213 65.7
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 1.4e-77 293.5 218 69.3
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.8e-77 293.1 212 69.8
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 6.7e-77 291.2 204 71.1
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 6.7e-77 291.2 217 67.7
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.1e-76 290.4 216 69.4
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.1e-76 290.4 210 68.6
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 2.0e-76 289.7 212 67.9
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 2.0e-76 289.7 210 68.6
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 2.6e-76 289.3 218 65.1
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 3.3e-76 288.9 212 68.4
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 4.4e-76 288.5 203 69.5
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 4.4e-76 288.5 203 69.5
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 1.7e-75 286.6 203 71.9
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 3.7e-75 285.4 211 68.2
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 4.8e-75 285.0 214 64.5
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 8.2e-75 284.3 204 69.6
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 1.1e-74 283.9 203 69.5
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 1.4e-74 283.5 211 68.2
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 5.3e-74 281.6 212 66.5
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 7.0e-74 281.2 203 70.9
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 7.0e-74 281.2 206 66.5
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 9.1e-74 280.8 217 62.7
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 2.0e-73 279.6 210 63.3
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 3.5e-73 278.9 204 64.7
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 3.5e-73 278.9 210 62.9
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 1.3e-72 276.9 204 67.6
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 2.2e-72 276.2 208 63.5
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 2.2e-72 276.2 203 68.0
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 3.8e-72 275.4 204 65.2
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 1.5e-71 273.5 218 60.6
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 1.9e-71 273.1 204 66.7
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 5.5e-71 271.6 214 60.7
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 7.2e-71 271.2 210 65.7
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 1.6e-70 270.0 216 63.9
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 2.1e-70 269.6 203 66.5
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 8.0e-70 267.7 203 65.0
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 8.0e-70 267.7 181 74.0
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.0e-69 267.3 164 81.1
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 1.0e-69 267.3 203 67.0
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.4e-69 266.9 267 53.9
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 1.8e-69 266.5 205 64.9
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 1.8e-69 266.5 203 64.0
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 3.0e-69 265.8 205 64.4
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 3.0e-69 265.8 209 62.2
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 4.0e-69 265.4 205 64.4
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 4.0e-69 265.4 211 62.6
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 4.0e-69 265.4 205 62.4
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 5.2e-69 265.0 200 66.5
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 5.2e-69 265.0 205 64.4
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 1.2e-68 263.8 205 64.4
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 1.2e-68 263.8 205 64.4
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 2.6e-68 262.7 203 65.5
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 2.6e-68 262.7 218 57.8
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 2.6e-68 262.7 222 60.4
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 3.4e-68 262.3 203 64.5
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 3.4e-68 262.3 218 57.8
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 4.4e-68 261.9 204 61.3
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 5.7e-68 261.5 203 63.1
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 1.7e-67 260.0 200 64.5
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 2.8e-67 259.2 203 64.0
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 6.3e-67 258.1 209 60.3
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 8.3e-67 257.7 162 75.9
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 4.1e-66 255.4 204 59.3
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 9.1e-66 254.2 216 58.3
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 1.6e-65 253.4 206 62.1
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 1.6e-65 253.4 205 60.0
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 3.5e-65 252.3 204 62.7
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 1.3e-64 250.4 201 64.2
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.9e-64 249.2 178 73.6
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 5.0e-64 248.4 211 59.7
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 3.2e-63 245.7 200 57.5
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 2.3e-61 239.6 200 57.0
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 5.7e-60 235.0 192 60.9
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 5.7e-60 235.0 192 60.9
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 1.3e-59 233.8 183 65.0
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 2.2e-59 233.0 212 55.2
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 3.7e-59 232.3 205 57.6
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 4.9e-59 231.9 186 64.0
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 4.9e-59 231.9 202 54.0
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 8.3e-59 231.1 168 62.5
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 4.1e-58 228.8 205 58.0
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 1.0e-56 224.2 162 67.9
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 2.3e-56 223.0 205 57.6
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 3.8e-56 222.2 178 63.5
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 1.9e-55 219.9 204 56.4
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 1.9e-55 219.9 212 54.2
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 1.9e-55 219.9 167 66.5
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 4.3e-55 218.8 191 59.2
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 7.3e-55 218.0 156 68.6
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 1.6e-54 216.9 217 54.8
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.1e-54 216.5 214 53.7
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 2.1e-54 216.5 210 51.4
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.0e-53 214.2 201 56.7
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 5.7e-52 208.4 211 50.7
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 1.3e-51 207.2 191 59.7
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.7e-51 206.8 211 49.8
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 1.1e-50 204.1 206 48.1
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.4e-50 203.8 211 55.0
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 1.2e-49 200.7 148 68.2
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.1e-47 194.1 202 49.5
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.4e-45 187.2 146 65.1
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 2.3e-45 186.4 200 44.5
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 1.7e-43 180.3 203 51.2
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 5.4e-42 175.3 146 53.4
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 6.0e-41 171.8 206 47.1
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.3e-40 170.6 109 74.3
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 1.6e-38 163.7 203 48.3
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 4.7e-38 162.2 218 38.5
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 8.9e-37 157.9 103 77.7
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 2.2e-35 153.3 95 76.8
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 8.3e-35 151.4 209 41.1
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 1.1e-34 151.0 99 71.7
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 1.6e-33 147.1 200 37.0
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 2.7e-33 146.4 200 42.0
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 4.6e-33 145.6 304 30.9
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.3e-32 144.1 200 42.5
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 7.3e-31 138.3 128 62.5
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.8e-30 136.3 182 45.1
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 4.4e-28 129.0 127 46.5
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 1.1e-26 124.4 206 35.9
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 4.1e-26 122.5 93 64.5
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 5.4e-26 122.1 203 36.0
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.3e-24 117.5 82 70.7
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 9.6e-23 111.3 88 56.8
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 5.6e-15 85.5 65 64.6
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 2.4e-13 80.1 79 49.4
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 2.4e-13 80.1 206 33.5
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 5.4e-10 68.9 50 68.0
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 2.7e-09 66.6 43 72.1
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 1.3e-06 57.8 45 62.2


User provided reference genes

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