Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 1.5e-155 552.7 270 100.0
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 8.4e-98 360.9 241 73.9
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 8.2e-93 344.4 223 75.3
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 3.4e-91 339.0 227 74.0
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 5.8e-91 338.2 243 69.1
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 7.6e-91 337.8 210 74.8
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 1.0e-90 337.4 273 64.8
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.3e-90 337.0 227 72.2
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 2.2e-90 336.3 227 73.1
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 2.9e-90 335.9 230 73.0
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 5.0e-90 335.1 210 77.1
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 2.5e-89 332.8 227 72.2
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 2.5e-89 332.8 230 71.7
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.5e-89 332.8 227 72.7
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 5.5e-89 331.6 210 74.3
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 7.1e-89 331.3 210 73.8
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 7.1e-89 331.3 210 74.3
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 9.3e-89 330.9 210 74.8
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 9.3e-89 330.9 210 74.8
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 9.3e-89 330.9 227 72.7
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 1.2e-88 330.5 227 70.5
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.2e-88 330.5 230 70.9
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.1e-88 329.7 210 74.3
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 3.5e-88 328.9 226 73.0
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 3.5e-88 328.9 226 73.0
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.5e-88 328.9 210 75.2
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 4.6e-88 328.6 226 73.9
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 6.1e-88 328.2 229 71.6
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 6.1e-88 328.2 227 70.9
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 6.1e-88 328.2 227 69.6
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 6.1e-88 328.2 233 69.5
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 6.1e-88 328.2 233 69.5
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 6.1e-88 328.2 230 70.4
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 7.9e-88 327.8 249 66.7
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 7.9e-88 327.8 227 68.7
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 7.9e-88 327.8 227 68.7
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 7.9e-88 327.8 210 73.3
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 7.9e-88 327.8 229 70.7
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 1.8e-87 326.6 225 71.1
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.3e-87 326.2 231 68.8
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 2.3e-87 326.2 210 73.8
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 3.0e-87 325.9 226 70.8
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 3.0e-87 325.9 231 68.8
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 3.0e-87 325.9 227 70.0
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 3.9e-87 325.5 227 68.7
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 3.9e-87 325.5 227 69.2
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 6.7e-87 324.7 210 74.3
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 8.7e-87 324.3 232 70.3
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 8.7e-87 324.3 209 76.1
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 8.7e-87 324.3 225 72.0
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.9e-86 323.2 231 68.4
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 3.3e-86 322.4 241 63.5
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 3.3e-86 322.4 227 71.8
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 3.3e-86 322.4 210 70.5
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 4.3e-86 322.0 227 70.0
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 5.7e-86 321.6 210 71.0
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 5.7e-86 321.6 210 72.9
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 5.7e-86 321.6 227 70.0
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 7.4e-86 321.2 227 70.0
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.2e-85 319.7 223 70.0
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 2.2e-85 319.7 229 70.3
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.8e-85 318.5 223 69.5
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 4.8e-85 318.5 227 67.8
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 4.8e-85 318.5 228 67.5
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 6.3e-85 318.2 228 68.4
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 8.2e-85 317.8 223 69.1
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 8.2e-85 317.8 226 69.0
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 1.1e-84 317.4 210 71.9
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.4e-84 317.0 228 69.3
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 1.4e-84 317.0 233 66.5
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 4.1e-84 315.5 210 71.4
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.9e-84 314.7 246 63.8
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.9e-84 314.7 210 71.0
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 6.9e-84 314.7 229 67.7
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 9.0e-84 314.3 210 71.9
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.0e-83 313.2 228 66.7
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.6e-83 312.8 228 67.1
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 2.6e-83 312.8 209 71.3
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 3.4e-83 312.4 227 67.8
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.5e-83 312.0 246 64.2
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 5.9e-83 311.6 227 67.4
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 2.2e-82 309.7 233 67.4
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 2.9e-82 309.3 224 66.1
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 5.0e-82 308.5 210 69.5
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 8.5e-82 307.8 243 65.0
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.9e-81 306.6 228 67.1
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.2e-81 305.8 228 68.4
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.2e-81 305.8 228 68.4
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 2.7e-80 302.8 227 67.0
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 6.1e-80 301.6 227 66.1
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 7.9e-80 301.2 210 68.1
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 7.9e-80 301.2 230 66.1
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 1.0e-79 300.8 245 61.2
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 1.4e-79 300.4 246 61.0
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 1.8e-79 300.1 246 60.6
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 1.8e-79 300.1 246 60.6
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 1.8e-79 300.1 227 68.7
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 3.0e-79 299.3 246 61.0
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 3.0e-79 299.3 246 60.6
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 5.1e-79 298.5 229 63.8
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 6.7e-79 298.1 229 63.8
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 6.7e-79 298.1 223 65.5
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 2.0e-78 296.6 229 63.3
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 2.0e-78 296.6 224 63.4
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 2.0e-78 296.6 231 63.2
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.5e-78 296.2 229 62.9
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 3.3e-78 295.8 231 61.9
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 4.3e-78 295.4 226 63.3
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 4.3e-78 295.4 230 62.6
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 4.3e-78 295.4 224 64.3
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 5.7e-78 295.0 229 64.2
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 7.4e-78 294.7 224 62.5
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 7.4e-78 294.7 227 63.9
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 9.7e-78 294.3 224 62.5
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 9.7e-78 294.3 230 63.9
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 4.1e-76 288.9 229 61.6
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 9.1e-76 287.7 222 64.4
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.6e-75 286.2 233 59.7
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 7.7e-75 284.6 227 63.0
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.0e-74 284.3 227 63.4
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 2.9e-74 282.7 210 63.8
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.8e-71 273.5 179 73.2
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 1.4e-68 263.8 230 60.9
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 1.0e-66 257.7 179 69.8
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.7e-66 256.9 210 62.9
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.5e-66 254.6 183 68.3
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 8.8e-63 244.6 213 57.7
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 3.7e-61 239.2 230 56.1
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 8.2e-61 238.0 211 54.5
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 5.0e-58 228.8 236 52.5
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 8.5e-58 228.0 186 64.5
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 7.2e-57 224.9 160 68.8
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 1.2e-56 224.2 159 68.6
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 3.6e-56 222.6 160 66.9
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 4.8e-53 212.2 174 62.6
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 2.0e-51 206.8 227 47.6
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 5.5e-49 198.7 234 45.7
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 2.3e-47 193.4 136 67.6
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 3.4e-46 189.5 238 45.4
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.2e-45 186.8 226 46.0
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.7e-43 179.9 186 51.1
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 5.0e-42 175.6 180 53.3
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 8.0e-40 168.3 132 59.8
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.7e-37 160.6 109 67.0
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 1.4e-36 157.5 197 42.6
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 2.8e-32 143.3 99 67.7
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 4.4e-30 136.0 76 80.3
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 1.3e-29 134.4 90 71.1
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 3.7e-29 132.9 157 47.1
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.6e-27 127.5 230 37.4
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 3.3e-25 119.8 153 45.8
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.8e-24 116.7 90 67.8
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 8.9e-23 111.7 201 30.8
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 1.5e-22 110.9 91 61.5
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 3.0e-18 96.7 70 71.4
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 5.1e-18 95.9 90 52.2
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-16 91.3 72 62.5
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.6e-16 90.9 67 67.2
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 2.8e-16 90.1 71 66.2
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.8e-16 90.1 73 60.3
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.7e-16 89.4 73 60.3
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 6.2e-16 89.0 123 41.5
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.4e-12 77.8 57 66.7
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 3.2e-12 76.6 241 27.8
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 9.2e-12 75.1 69 58.0
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 6.0e-11 72.4 138 34.1
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 3.3e-09 66.6 59 62.7
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 9.6e-09 65.1 40 67.5
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 8.1e-08 62.0 33 87.9
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 1.5e-06 57.8 48 62.5


User provided reference genes

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