Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g293 Utricularia gibba HOM05D001245 ORTHO05D004900 1.8e-134 482.6 247 100.0
Migut.D00621 Erythranthe guttata HOM05D001245 ORTHO05D004900 2.4e-30 136.7 88 76.1
MSTRG.21365 Avicennia marina HOM05D001245 ORTHO05D004900 4.5e-29 132.5 89 69.7
Cc01_g04860 Coffea canephora HOM05D001245 ORTHO05D004900 2.2e-28 130.2 89 71.9
vmacro04136 Vaccinium macrocarpon HOM05D001245 ORTHO05D004900 1.1e-27 127.9 104 62.5
Actinidia16343 Actinidia chinensis HOM05D001245 ORTHO05D004900 1.4e-27 127.5 92 68.5
Actinidia06921 Actinidia chinensis HOM05D001245 ORTHO05D004900 1.9e-27 127.1 92 67.4
CSS0024429 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004900 2.4e-27 126.7 92 68.5
MSTRG.12463 Avicennia marina HOM05D001245 ORTHO05D004900 5.5e-27 125.6 91 67.0
TAR633G0303 Trochodendron aralioides HOM05D001245 ORTHO05D004900 7.1e-27 125.2 98 63.3
Dinv36237 Davidia involucrata HOM05D001245 ORTHO05D004900 2.7e-26 123.2 89 66.3
Peaxi162Scf00032g00821 Petunia axillaris HOM05D001245 ORTHO05D004900 3.5e-26 122.9 85 67.1
ECA248G2887 Erigeron canadensis HOM05D001245 ORTHO05D004900 4.6e-26 122.5 90 67.8
SGA_v2.0_scaffold1G00741 Striga asiatica HOM05D001245 ORTHO05D004900 6.0e-26 122.1 86 69.8
DCAR_024415 Daucus carota HOM05D001245 ORTHO05D004900 1.0e-25 121.3 89 65.2
Lsat_1_v5_gn_1_77681 Lactuca sativa HOM05D001245 ORTHO05D004900 1.3e-25 120.9 93 66.7
CAN.G821.1 Capsicum annuum HOM05D001245 ORTHO05D004900 2.3e-25 120.2 80 70.0
HanXRQChr01g0023921 Helianthus annuus HOM05D001245 ORTHO05D004900 3.0e-25 119.8 93 63.4
SGA_v2.0_scaffold29G12323 Striga asiatica HOM05D001245 ORTHO05D004900 3.0e-25 119.8 86 68.6
Dinv22163 Davidia involucrata HOM05D001245 ORTHO05D004900 6.7e-25 118.6 92 63.0
RcHm_v2.0_Chr5g0052801 Rosa chinensis HOM05D001245 ORTHO05D004900 8.7e-25 118.2 82 70.7
Solyc01g008560.3 Solanum lycopersicum HOM05D001245 ORTHO05D004900 2.5e-24 116.7 85 64.7
Sopen01g004100 Solanum pennellii HOM05D001245 ORTHO05D004900 2.5e-24 116.7 85 64.7
PGSC0003DMG400010485 Solanum tuberosum HOM05D001245 ORTHO05D004900 3.3e-24 116.3 85 64.7
GSVIVG01025236001 Vitis vinifera HOM05D001245 ORTHO05D004900 7.4e-24 115.2 80 71.2
HanXRQChr11g0343641 Helianthus annuus HOM05D001245 ORTHO05D004900 1.3e-23 114.4 92 59.8
FvH4_3g28510 Fragaria vesca HOM05D001245 ORTHO05D004900 2.1e-23 113.6 85 65.9
FAN11G1174 Fragaria x ananassa HOM05D001245 ORTHO05D004900 2.1e-23 113.6 85 65.9
Gorai.006G127100 Gossypium raimondii HOM05D001245 ORTHO05D004900 3.7e-23 112.8 83 63.9
Lj2C626G1 Lonicera japonica HOM05D001245 ORTHO05D004900 3.7e-23 112.8 79 67.1
Hund22008 Selenicereus undatus HOM05D001245 ORTHO05D004900 3.7e-23 112.8 98 66.3
Gohir.A05G069800 Gossypium hirsutum HOM05D001245 ORTHO05D004900 4.8e-23 112.5 89 59.6
FAN21G1833 Fragaria x ananassa HOM05D001245 ORTHO05D004900 6.2e-23 112.1 85 64.7
FAN25G0433 Fragaria x ananassa HOM05D001245 ORTHO05D004900 6.2e-23 112.1 85 64.7
TWI32G0811 Tripterygium wilfordii HOM05D001245 ORTHO05D004900 6.2e-23 112.1 82 63.4
MELO3C015180.2 Cucumis melo HOM05D001245 ORTHO05D004900 1.1e-22 111.3 86 62.8
CsaV3_1G042920 Cucumis sativus L. HOM05D001245 ORTHO05D004900 1.1e-22 111.3 86 62.8
Gohir.A09G113000 Gossypium hirsutum HOM05D001245 ORTHO05D004900 1.1e-22 111.3 83 62.7
Gohir.D05G072700 Gossypium hirsutum HOM05D001245 ORTHO05D004900 1.1e-22 111.3 80 62.5
Prupe.4G254100 Prunus persica HOM05D001245 ORTHO05D004900 1.1e-22 111.3 93 60.2
Sc06g0004620 Simmondsia chinensis HOM05D001245 ORTHO05D004900 1.1e-22 111.3 82 69.5
COL.COLO4_05366 Corchorus olitorius HOM05D001245 ORTHO05D004900 1.4e-22 110.9 80 63.8
FAN16G0752 Fragaria x ananassa HOM05D001245 ORTHO05D004900 1.8e-22 110.5 85 63.5
Thecc.09G237500 Theobroma cacao HOM05D001245 ORTHO05D004900 1.8e-22 110.5 80 63.8
Nitab4.5_0001747g0010 Nicotiana tabacum HOM05D001245 ORTHO05D004900 2.4e-22 110.2 73 71.2
Nitab4.5_0009763g0010 Nicotiana tabacum HOM05D001245 ORTHO05D004900 2.4e-22 110.2 73 71.2
Atru.chr3.2671_Atru.chr3.2672 Acer truncatum HOM05D001245 ORTHO05D004900 3.1e-22 109.8 79 65.8
arahy.Tifrunner.gnm1.ann1.J55WMV Arachis hypogaea HOM05D001245 ORTHO05D004900 3.1e-22 109.8 90 61.1
TAR623G0953 Trochodendron aralioides HOM05D001245 ORTHO05D004900 3.1e-22 109.8 79 65.8
Sed0004060 Sechium edule HOM05D001245 ORTHO05D004900 4.0e-22 109.4 86 60.5
Manes.06G162500 Manihot esculenta HOM05D001245 ORTHO05D004900 5.3e-22 109.0 80 63.8
arahy.Tifrunner.gnm1.ann1.9YG71W Arachis hypogaea HOM05D001245 ORTHO05D004900 6.9e-22 108.6 90 60.0
PGR119G2403 Punica granatum HOM05D001245 ORTHO05D004900 6.9e-22 108.6 80 62.5
TWI60G0980 Tripterygium wilfordii HOM05D001245 ORTHO05D004900 6.9e-22 108.6 79 65.8
ClCG03G013120 Citrullus lanatus HOM05D001245 ORTHO05D004900 9.0e-22 108.2 86 60.5
MD03G1172500 Malus domestica HOM05D001245 ORTHO05D004900 9.0e-22 108.2 79 63.3
Aqoxy2G00231 Aquilegia oxysepala HOM05D001245 ORTHO05D004900 1.2e-21 107.8 86 62.8
Gorai.009G073700 Gossypium raimondii HOM05D001245 ORTHO05D004900 1.2e-21 107.8 80 61.2
Sc16g0011310 Simmondsia chinensis HOM05D001245 ORTHO05D004900 1.5e-21 107.5 83 67.5
DCAR_002082 Daucus carota HOM05D001245 ORTHO05D004900 2.6e-21 106.7 86 62.8
QL01p004208 Quercus lobata HOM05D001245 ORTHO05D004900 2.6e-21 106.7 79 68.4
Psat7g172200 Pisum sativum HOM05D001245 ORTHO05D004900 3.4e-21 106.3 89 59.6
Sabra09G0037600 Salix brachista HOM05D001245 ORTHO05D004900 3.4e-21 106.3 86 55.8
TPR.G13758 Trifolium pratense HOM05D001245 ORTHO05D004900 3.4e-21 106.3 80 66.2
Hund07492 Selenicereus undatus HOM05D001245 ORTHO05D004900 4.5e-21 105.9 89 61.8
Manes.14G003900 Manihot esculenta HOM05D001245 ORTHO05D004900 5.8e-21 105.5 79 62.0
Ah.06g193940 Amaranthus hybridus HOM05D001245 ORTHO05D004900 7.6e-21 105.1 83 65.1
Ca_18972_v3 Cicer arietinum L. HOM05D001245 ORTHO05D004900 7.6e-21 105.1 83 62.7
Lj3g0006919 Lotus japonicus HOM05D001245 ORTHO05D004900 7.6e-21 105.1 79 65.8
VMungo1127G1052 Vigna mungo HOM05D001245 ORTHO05D004900 7.6e-21 105.1 82 65.9
Duzib170G0912 Durio zibethinus HOM05D001245 ORTHO05D004900 1.0e-20 104.8 80 61.2
Nn2g15212 Nelumbo nucifera HOM05D001245 ORTHO05D004900 1.0e-20 104.8 84 63.1
Eucgr.J00748 Eucalyptus grandis HOM05D001245 ORTHO05D004900 1.3e-20 104.4 80 63.8
CANSAT54G0430 Cannabis sativa HOM05D001245 ORTHO05D004900 1.7e-20 104.0 79 65.8
Cfa009791 Carpinus fangiana HOM05D001245 ORTHO05D004900 1.7e-20 104.0 80 66.2
Potri.009G051500 Populus trichocarpa HOM05D001245 ORTHO05D004900 1.7e-20 104.0 91 56.0
Cpa.g.sc84.35 Carica papaya HOM05D001245 ORTHO05D004900 2.2e-20 103.6 79 63.3
MBI17_g18830_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004900 2.9e-20 103.2 80 62.5
Medtr4g076990 Medicago truncatula HOM05D001245 ORTHO05D004900 2.9e-20 103.2 86 59.3
Phvul.011G022700 Phaseolus vulgaris HOM05D001245 ORTHO05D004900 3.8e-20 102.8 81 65.4
Haze_23162 Corylus avellana HOM05D001245 ORTHO05D004900 4.9e-20 102.4 79 65.8
Glyma.12G020100 Glycine max HOM05D001245 ORTHO05D004900 8.4e-20 101.7 82 63.4
Lalb_Chr19g0139801 Lupinus albus HOM05D001245 ORTHO05D004900 8.4e-20 101.7 86 60.5
CiPaw.14G117400 Carya illinoinensis HOM05D001245 ORTHO05D004900 1.1e-19 101.3 76 69.7
PSO339G0578 Papaver somniferum HOM05D001245 ORTHO05D004900 1.1e-19 101.3 78 61.5
EL10Ac4g10216 Beta vulgaris HOM05D001245 ORTHO05D004900 1.9e-19 100.5 85 65.9
EL10Ac4g10221 Beta vulgaris HOM05D001245 ORTHO05D004900 1.9e-19 100.5 85 65.9
Migut.N02339 Erythranthe guttata HOM05D001245 ORTHO05D004900 3.2e-19 99.8 87 63.2
BcaB06g26174 Brassica carinata HOM05D001245 ORTHO05D004900 4.2e-19 99.4 86 58.1
Glyma.11G093600 Glycine max HOM05D001245 ORTHO05D004900 4.2e-19 99.4 81 63.0
PSO384G2906 Papaver somniferum HOM05D001245 ORTHO05D004900 4.2e-19 99.4 78 60.3
Potri.001G256100 Populus trichocarpa HOM05D001245 ORTHO05D004900 2.1e-18 97.1 91 51.6
AT3G21070 Arabidopsis thaliana HOM05D001245 ORTHO05D004900 7.9e-18 95.1 83 56.6
BcaC05g28218 Brassica carinata HOM05D001245 ORTHO05D004900 7.9e-18 95.1 81 59.3
C05p43020 Brassica napus HOM05D001245 ORTHO05D004900 7.9e-18 95.1 81 59.3
BolC5t33033H Brassica oleracea HOM05D001245 ORTHO05D004900 7.9e-18 95.1 81 59.3
CDE02G0159 Ceratophyllum demersum HOM05D001245 ORTHO05D004900 7.9e-18 95.1 82 59.8
Thhalv10020469m.g Eutrema salsugineum HOM05D001245 ORTHO05D004900 7.9e-18 95.1 90 54.4
MD11G1190400 Malus domestica HOM05D001245 ORTHO05D004900 7.9e-18 95.1 79 59.5
BcaB04g19134 Brassica carinata HOM05D001245 ORTHO05D004900 1.0e-17 94.7 86 57.0
A01p33780 Brassica napus HOM05D001245 ORTHO05D004900 1.0e-17 94.7 86 57.0
C01p43200 Brassica napus HOM05D001245 ORTHO05D004900 1.0e-17 94.7 86 57.0
BolC1t04266H Brassica oleracea HOM05D001245 ORTHO05D004900 1.3e-17 94.4 86 57.0
Duzib168G0839 Durio zibethinus HOM05D001245 ORTHO05D004900 1.3e-17 94.4 66 66.7
A05p27650 Brassica napus HOM05D001245 ORTHO05D004900 1.8e-17 94.0 86 55.8
BraA05t21658Z Brassica rapa HOM05D001245 ORTHO05D004900 1.8e-17 94.0 86 55.8
Carub.0003s2097 Capsella rubella HOM05D001245 ORTHO05D004900 1.8e-17 94.0 84 58.3
THA.LOC104817912 Tarenaya hassleriana HOM05D001245 ORTHO05D004900 1.8e-17 94.0 93 53.8
Thhalv10009421m.g Eutrema salsugineum HOM05D001245 ORTHO05D004900 2.3e-17 93.6 90 54.4
BraA01t03489Z Brassica rapa HOM05D001245 ORTHO05D004900 3.0e-17 93.2 86 57.0
SHI29795 Sapria himalayana HOM05D001245 ORTHO05D004900 3.0e-17 93.2 87 52.9
Zm00001eb140570 Zea mays HOM05D001245 ORTHO05D004900 3.0e-17 93.2 79 63.3
CDE06G1045 Ceratophyllum demersum HOM05D001245 ORTHO05D004900 5.1e-17 92.4 79 59.5
Aa31LG8G7790 Aethionema arabicum HOM05D001245 ORTHO05D004900 6.7e-17 92.0 80 57.5
BcaC09g49046 Brassica carinata HOM05D001245 ORTHO05D004900 6.7e-17 92.0 79 60.8
AUR62000145 Chenopodium quinoa HOM05D001245 ORTHO05D004900 6.7e-17 92.0 86 53.5
AUR62019326 Chenopodium quinoa HOM05D001245 ORTHO05D004900 8.7e-17 91.7 91 51.6
Sabra16G0156300 Salix brachista HOM05D001245 ORTHO05D004900 8.7e-17 91.7 91 49.5
ATR0730G209 Amborella trichopoda HOM05D001245 ORTHO05D004900 1.5e-16 90.9 79 57.0
AL3G35020 Arabidopsis lyrata HOM05D001245 ORTHO05D004900 1.9e-16 90.5 81 54.3
Sp3g19030 Schrenkiella parvula HOM05D001245 ORTHO05D004900 2.5e-16 90.1 79 59.5
BcaB04g20614 Brassica carinata HOM05D001245 ORTHO05D004900 3.3e-16 89.7 86 53.5
A03p42010 Brassica napus HOM05D001245 ORTHO05D004900 4.3e-16 89.4 88 56.8
BraA03t13355Z Brassica rapa HOM05D001245 ORTHO05D004900 4.3e-16 89.4 88 56.8
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 9.6e-16 88.2 87 56.3
BolC3t17428H Brassica oleracea HOM05D001245 ORTHO05D004900 9.6e-16 88.2 87 56.3
Zm00001eb362660 Zea mays HOM05D001245 ORTHO05D004900 3.7e-15 86.3 79 59.5
C03p51430 Brassica napus HOM05D001245 ORTHO05D004900 4.8e-15 85.9 87 55.2
CARHR096910 Cardamine hirsuta HOM05D001245 ORTHO05D004900 1.1e-14 84.7 83 56.6
Lsat_1_v5_gn_8_29581 Lactuca sativa HOM05D015688 ORTHO05D025746 2.4e-14 83.6 90 53.3
SEGI_37379 Sequoiadendron giganteum HOM05D001245 ORTHO05D004900 2.4e-14 83.6 66 65.2
Os01g0957000 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004900 6.9e-14 82.0 78 56.4
Os05g0388400 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004900 6.9e-14 82.0 75 57.3
Gohir.D09G109500 Gossypium hirsutum HOM05D001245 ORTHO05D004900 3.4e-13 79.7 80 50.0
HanXRQChr14g0432931 Helianthus annuus HOM05D001245 ORTHO05D004900 1.0e-12 78.2 50 74.0
CiPaw.13G157600 Carya illinoinensis HOM05D001245 ORTHO05D004900 1.3e-12 77.8 66 60.6
CiPaw.13G156400 Carya illinoinensis HOM05D001245 ORTHO05D004900 2.2e-12 77.0 65 61.5
CiPaw.13G157300 Carya illinoinensis HOM05D001245 ORTHO05D004900 1.1e-11 74.7 66 59.1
Mapoly0052s0071 Marchantia polymorpha HOM05D001245 ORTHO05D004900 1.1e-11 74.7 80 47.5
Pp3c6_3660 Physcomitrium patens HOM05D001245 ORTHO05D004900 3.2e-11 73.2 84 48.8
Pp3c25_12850 Physcomitrium patens HOM05D001245 ORTHO05D004900 6.1e-10 68.9 80 50.0
Lalb_Chr03g0024471 Lupinus albus HOM05D001245 ORTHO05D004900 7.9e-10 68.6 78 47.4
Pp3c10_23020 Physcomitrium patens HOM05D001245 ORTHO05D004900 2.5e-08 63.5 128 35.2
Ciclev10014881m.g Citrus clementina HOM05D001245 ORTHO05D004900 3.3e-08 63.2 40 82.5
Lsat_1_v5_gn_2_30041 Lactuca sativa HOM05D001245 ORTHO05D004900 3.7e-07 59.7 100 38.0


User provided reference genes

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