Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 1.9e-78 295.8 151 100.0
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 2.4e-54 215.7 133 75.9
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.4e-54 215.7 132 77.3
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 2.4e-54 215.7 134 77.6
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 2.4e-54 215.7 136 75.0
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 4.2e-54 214.9 133 78.2
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 1.6e-53 213.0 132 76.5
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 2.1e-53 212.6 134 76.1
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 2.7e-53 212.2 134 75.4
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 6.0e-53 211.1 146 72.6
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 1.3e-52 209.9 133 74.4
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 1.3e-52 209.9 133 73.7
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.8e-52 209.5 133 75.2
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 2.3e-52 209.1 133 74.4
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 3.0e-52 208.8 156 67.3
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 3.9e-52 208.4 132 75.0
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 5.1e-52 208.0 133 75.2
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 5.1e-52 208.0 136 71.3
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 6.7e-52 207.6 133 74.4
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 6.7e-52 207.6 132 73.5
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.1e-51 206.8 134 73.1
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.1e-51 206.8 128 76.6
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 1.1e-51 206.8 133 73.7
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 2.5e-51 205.7 138 73.2
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 5.6e-51 204.5 128 75.0
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.6e-50 203.0 133 72.9
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 2.8e-50 202.2 133 70.7
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 3.7e-50 201.8 136 72.1
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 4.8e-50 201.4 134 73.1
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 6.2e-50 201.1 130 70.8
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 1.1e-49 200.3 145 66.9
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.4e-49 199.9 133 69.9
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 1.8e-49 199.5 133 69.2
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 2.4e-49 199.1 132 72.0
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 3.1e-49 198.7 130 70.0
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 4.0e-49 198.4 135 70.4
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 4.0e-49 198.4 135 70.4
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 4.0e-49 198.4 133 70.7
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 5.3e-49 198.0 133 69.2
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 5.3e-49 198.0 138 69.6
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 9.0e-49 197.2 129 73.6
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 9.0e-49 197.2 136 69.1
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.5e-48 196.4 133 69.2
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 1.5e-48 196.4 133 69.2
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 1.5e-48 196.4 132 72.0
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 2.0e-48 196.1 133 69.2
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 2.0e-48 196.1 133 68.4
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 2.0e-48 196.1 135 70.4
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 2.0e-48 196.1 133 69.2
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 2.0e-48 196.1 129 70.5
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 3.4e-48 195.3 133 68.4
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 3.4e-48 195.3 133 68.4
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 3.4e-48 195.3 133 68.4
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 4.5e-48 194.9 131 69.5
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 4.5e-48 194.9 133 67.7
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 7.6e-48 194.1 133 67.7
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 7.6e-48 194.1 133 66.2
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 1.0e-47 193.7 165 61.8
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.0e-47 193.7 133 67.7
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 1.0e-47 193.7 135 70.4
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 1.0e-47 193.7 134 67.2
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 1.0e-47 193.7 132 70.5
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.3e-47 193.4 128 70.3
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 1.3e-47 193.4 133 68.4
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 1.3e-47 193.4 142 64.1
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 1.7e-47 193.0 133 68.4
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 1.7e-47 193.0 135 68.9
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 1.7e-47 193.0 134 65.7
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 1.7e-47 193.0 133 69.2
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 1.7e-47 193.0 135 65.9
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 2.2e-47 192.6 133 66.9
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 2.9e-47 192.2 133 65.4
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 2.9e-47 192.2 133 65.4
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 2.9e-47 192.2 133 66.9
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 3.8e-47 191.8 133 66.2
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 3.8e-47 191.8 133 66.2
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 3.8e-47 191.8 133 66.2
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 6.5e-47 191.0 133 65.4
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 6.5e-47 191.0 129 68.2
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 6.5e-47 191.0 133 67.7
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 8.4e-47 190.7 133 66.9
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 8.4e-47 190.7 133 67.7
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 1.1e-46 190.3 127 69.3
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 1.1e-46 190.3 133 66.9
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 1.1e-46 190.3 133 66.9
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 3.2e-46 188.7 133 66.2
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 4.2e-46 188.3 152 60.5
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 4.2e-46 188.3 135 68.1
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 5.5e-46 188.0 133 66.2
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 9.3e-46 187.2 133 66.2
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 1.2e-45 186.8 133 66.2
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 6.0e-45 184.5 133 64.7
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 7.9e-45 184.1 146 64.4
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.0e-44 183.7 135 61.5
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.0e-44 183.7 135 61.5
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 3.0e-44 182.2 133 66.2
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 3.9e-44 181.8 107 82.2
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 5.1e-44 181.4 133 65.4
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 5.1e-44 181.4 133 65.4
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 6.7e-44 181.0 135 60.7
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 4.3e-43 178.3 134 62.7
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 2.0e-40 169.5 133 60.9
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 1.0e-39 167.2 110 71.8
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 2.2e-39 166.0 112 69.6
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 5.5e-38 161.4 137 56.2
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 1.2e-37 160.2 130 57.7
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 3.6e-37 158.7 131 56.5
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 3.9e-36 155.2 131 57.3
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 3.9e-36 155.2 132 61.4
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 6.7e-36 154.5 134 57.5
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 1.9e-35 152.9 129 54.3
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 3.3e-35 152.1 108 65.7
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 2.2e-31 139.4 107 60.7
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 2.7e-29 132.5 136 52.9
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 8.8e-28 127.5 89 68.5
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 5.7e-27 124.8 90 67.8
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 1.7e-26 123.2 72 75.0
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.7e-26 123.2 73 74.0
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.9e-23 112.5 89 60.7
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 2.5e-22 109.4 85 60.0
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 2.6e-19 99.4 54 79.6
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 9.7e-19 97.4 54 77.8
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 6.3e-18 94.7 122 40.2
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.6e-16 89.4 54 77.8
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 6.5e-15 84.7 86 53.5
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 1.4e-12 77.0 39 82.1
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 2.8e-10 69.3 141 34.0
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 3.7e-10 68.9 37 78.4
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 1.7e-07 60.1 141 29.1
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 4.2e-06 55.5 86 39.5


User provided reference genes

Program Settings