Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 4.3e-147 524.6 261 100.0
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.3e-90 337.0 232 75.0
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 6.3e-90 334.7 241 70.5
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 3.1e-89 332.4 231 71.0
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 4.3e-83 312.0 254 63.8
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 2.8e-82 309.3 230 67.4
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.0e-79 300.8 206 72.3
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 1.0e-79 300.8 205 72.2
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 1.7e-79 300.1 205 71.2
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 2.2e-79 299.7 205 71.7
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 5.0e-79 298.5 205 72.7
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 6.5e-79 298.1 259 62.2
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 3.2e-78 295.8 206 71.4
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 4.2e-78 295.4 215 66.5
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 7.2e-78 294.7 205 71.2
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 2.1e-77 293.1 258 62.4
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 3.6e-77 292.4 205 69.8
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.8e-76 290.0 202 70.8
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 3.9e-76 288.9 232 65.1
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 5.1e-76 288.5 202 69.8
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 1.1e-75 287.3 213 65.7
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 1.1e-75 287.3 252 59.9
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.5e-75 287.0 202 69.3
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 2.5e-75 286.2 245 60.8
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 3.3e-75 285.8 215 66.5
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.3e-74 283.9 206 67.5
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 2.8e-74 282.7 213 66.2
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 6.3e-74 281.6 215 64.2
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 1.8e-73 280.0 198 69.7
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 3.1e-73 279.3 235 63.4
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.3e-73 278.5 205 66.3
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 1.2e-72 277.3 214 65.0
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 1.5e-72 276.9 187 70.6
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 1.5e-72 276.9 254 57.1
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 2.0e-72 276.6 211 65.9
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 2.0e-72 276.6 184 71.7
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 2.0e-72 276.6 203 66.0
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 2.6e-72 276.2 190 68.9
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 5.9e-72 275.0 190 68.4
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 5.9e-72 275.0 203 66.5
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 5.9e-72 275.0 203 66.5
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 7.7e-72 274.6 190 68.9
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 7.7e-72 274.6 189 69.3
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.0e-71 274.2 202 67.3
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 1.0e-71 274.2 189 70.9
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 2.2e-71 273.1 249 58.2
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 2.2e-71 273.1 201 66.7
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 2.2e-71 273.1 172 73.3
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 2.9e-71 272.7 198 66.2
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 3.8e-71 272.3 279 54.1
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 5.0e-71 271.9 202 66.8
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 6.5e-71 271.6 224 62.1
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 8.5e-71 271.2 203 65.5
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 8.5e-71 271.2 187 69.5
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 1.4e-70 270.4 213 64.8
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 1.4e-70 270.4 215 64.2
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 2.5e-70 269.6 189 69.8
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 5.5e-70 268.5 197 66.0
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 1.2e-69 267.3 190 66.8
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 2.1e-69 266.5 199 63.8
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 2.1e-69 266.5 189 68.3
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 2.7e-69 266.2 185 69.2
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 2.7e-69 266.2 187 67.9
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 2.7e-69 266.2 188 67.0
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 3.6e-69 265.8 204 63.2
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 6.1e-69 265.0 197 65.5
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 7.9e-69 264.6 189 67.7
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 1.0e-68 264.2 203 62.6
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.0e-68 264.2 266 55.6
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.4e-68 263.8 212 60.4
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 1.4e-68 263.8 202 63.9
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.8e-68 263.5 263 54.0
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 1.8e-68 263.5 203 65.0
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.8e-68 263.5 207 63.3
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.8e-68 263.5 207 63.3
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.8e-68 263.5 217 62.7
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 1.8e-68 263.5 191 69.1
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.8e-68 263.5 174 71.3
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 2.3e-68 263.1 277 52.3
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 3.9e-68 262.3 263 54.8
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 5.1e-68 261.9 186 66.7
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 1.5e-67 260.4 205 61.0
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 3.3e-67 259.2 186 66.1
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.3e-66 257.3 194 64.4
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.3e-66 257.3 194 64.4
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 1.3e-66 257.3 194 64.4
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.3e-66 257.3 175 70.3
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 2.8e-66 256.1 185 67.6
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 2.8e-66 256.1 203 63.5
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 4.8e-66 255.4 224 58.0
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 8.2e-66 254.6 242 56.6
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 1.4e-65 253.8 204 62.7
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 1.8e-65 253.4 169 70.4
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 2.4e-65 253.1 267 53.2
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 3.1e-65 252.7 202 61.9
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 5.3e-65 251.9 220 59.1
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 5.3e-65 251.9 204 60.8
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 7.0e-65 251.5 189 66.1
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 9.1e-65 251.1 183 67.8
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 1.2e-64 250.8 173 69.9
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 3.5e-64 249.2 216 58.8
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 4.5e-64 248.8 189 67.7
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 1.7e-63 246.9 204 60.3
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.7e-63 246.9 204 60.3
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.7e-63 246.9 204 60.3
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.7e-63 246.9 204 60.3
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 6.5e-63 245.0 206 61.7
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 4.2e-62 242.3 177 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 3.0e-60 236.1 182 64.3
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.0e-59 233.4 228 53.9
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 2.6e-59 233.0 160 68.1
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 2.8e-58 229.6 232 52.2
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.8e-57 226.9 160 70.6
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.3e-55 220.7 136 75.0
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 2.7e-53 213.0 162 66.0
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 6.8e-52 208.4 225 53.8
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 1.5e-51 207.2 158 67.1
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 2.0e-48 196.8 205 53.7
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 5.9e-48 195.3 158 65.2
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 1.7e-47 193.7 140 66.4
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 2.9e-47 193.0 143 67.1
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 1.5e-46 190.7 153 62.1
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.2e-45 187.6 109 79.8
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 2.7e-45 186.4 118 77.1
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 3.3e-38 162.9 93 80.6
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 3.3e-30 136.3 166 42.2
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.3e-30 136.0 188 44.1
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 9.5e-30 134.8 92 67.4
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 4.0e-28 129.4 137 49.6
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 7.5e-27 125.2 182 46.2
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.3e-26 124.4 133 46.6
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 1.9e-25 120.6 115 57.4
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.8e-21 106.7 96 59.4
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.8e-21 106.7 96 59.4
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 1.1e-20 104.8 116 50.0
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 1.5e-19 100.9 72 66.7
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 3.2e-17 93.2 98 51.0
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 1.9e-14 84.0 110 47.3
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.4e-09 67.8 222 32.0
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 1.4e-09 67.8 39 74.4
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 1.7e-07 60.8 37 73.0
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 2.5e-06 57.0 43 65.1


User provided reference genes

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